View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_60 (Length: 398)
Name: NF11930_low_60
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 53616680 - 53616317
Alignment:
| Q |
19 |
gttagcgctgcatgagttgaaagcggagaagaatcttctaaaacgctctgaaagcatatccatgtttggtagataacgagcttcaacgattttcaaatcg |
118 |
Q |
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| T |
53616680 |
gttagcgctgcatgagttgaaagcggagaagaatcttctaaaacgctctgaaagcatatccatgtttggtagataacgagcttcaacgattttcaaatcg |
53616581 |
T |
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| Q |
119 |
aggttaccatgaaggtaaacgacggcttcagatttcggactaggagccattgttgccgttgacagaaaacgctaacgagatttagagaagaaatgtgata |
218 |
Q |
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| T |
53616580 |
aggttaccatgaaggtaaacgacggcttcagatttcggactaggagccattgttgccgttgacagaaaacgttaacgagatttagagaagaaatgtgata |
53616481 |
T |
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| Q |
219 |
gagagcgttgttgaatgagaaagatgaaacgctcgctatcacggatcgccgttacggacggcgacgattacagcattgttgttgaaatgaatactccggc |
318 |
Q |
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| T |
53616480 |
gagagcgttgttgaatgagaaagatgaaacgctcgctatcacggatcgccgttacggacggcgacgattacagcattgttgttgaaatgaatactccggc |
53616381 |
T |
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| Q |
319 |
ggagaaacggaattccgtttgtgcaggagagaaatgaaaaatgataaataaagaaatgtgatgt |
382 |
Q |
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| T |
53616380 |
ggagaaacggaattccgtttgtgtaggagagaaatgaaaaatgataaatatagaaatgtgatgt |
53616317 |
T |
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