View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_66 (Length: 382)
Name: NF11930_low_66
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_66 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 161 - 371
Target Start/End: Complemental strand, 26654917 - 26654707
Alignment:
| Q |
161 |
ttattcaattgctatatagttttgttattaaaaaataaattaaagaatgaatgtaaatgctctttctaatcgatcaatattgaaattgaattttcaatca |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26654917 |
ttattcaattgctatatagttttgttattaaaaaataaattaaagaatgaatgtaaatgctctttctaatcgataaatattgaaattgaattttcaatca |
26654818 |
T |
|
| Q |
261 |
aaggcnnnnnnnattactacaactaagagttcatcaccatttatggagaatatgaaaagcgcgtcactgtcatgatgttaggacttaagccaccacatca |
360 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26654817 |
aaggctttttttattactacaactaagagttcatcaccatttatggagaatatgaaaagcgcgtcactgtcatgatgttaggacttaagccaccacatca |
26654718 |
T |
|
| Q |
361 |
agcactttcat |
371 |
Q |
| |
|
||||||||||| |
|
|
| T |
26654717 |
agcactttcat |
26654707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 26655073 - 26654942
Alignment:
| Q |
19 |
tacaatggagcccttcttctaaagtgcatcatgctaaatagatacccttataatatcaataatttaggttcctatagagatggatgattatataagctct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26655073 |
tacaatggagcccttcttctaaagtgcatcatgctaaatagatacccttataatatcaataatttaggttcctatagagatggatgattatataagctct |
26654974 |
T |
|
| Q |
119 |
ctctatcttatttatgtatgggtcacacatgc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26654973 |
ctctatcttatttatgtatgggtcacacatgc |
26654942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University