View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_67 (Length: 381)
Name: NF11930_low_67
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 26 - 371
Target Start/End: Complemental strand, 25037101 - 25036754
Alignment:
| Q |
26 |
agaacttcatgcacttttccacttgagctttccaaccctttttccacctgtgatatgccaaactgttggtggttttacataagtaaaaattatatgtatt |
125 |
Q |
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| T |
25037101 |
agaacttcatgcaattttccacttgagatttccaaccctttttccacctgtgatatgccaaactgttagtggttttacataagtaaaaattatatgtatt |
25037002 |
T |
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| Q |
126 |
tgatctgaacataaaccaaatacacataataatttgannnnnnnnnngttgcaaattttgaaaactata--aggagtatgtcataccaaatcatcttaaa |
223 |
Q |
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| T |
25037001 |
tgatctgaacataaaccaaatacacataataatttgattttttttttgtttcaaattttggagactatataaggagtatgtcataccaaatcatcttaaa |
25036902 |
T |
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| Q |
224 |
atattgtactggaaaactcaataccccattgtcattataaaatttaaaaacttcaattttttaccattaaattaattatttcaatatgcaaagttaccta |
323 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25036901 |
atattgtactagaaaactcaataccccattgtcattataaaatttaagaacttcaattttttaccattaaattaattatttcaatatgcaaagttaccta |
25036802 |
T |
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| Q |
324 |
tgaaatcttatggtgactgccgcctattgcataaatgtccatgccccc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25036801 |
tgaaatcttatggtgactgccgcctattgcataaatgtccatgccccc |
25036754 |
T |
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