View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_68 (Length: 381)
Name: NF11930_low_68
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 41256542 - 41256887
Alignment:
| Q |
19 |
ggtgagcttgctgcttattctgctactgctgctactaatgatgaactgcctgacctgtatcagattattgctttgtcagatagagttcaaggtaacaatc |
118 |
Q |
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| T |
41256542 |
ggtgagcttgctgcttattctgctactgctgctactaatgatgaactgcttgacctgtatcagattattgctttgtcagatagagttcaaggtaacaatc |
41256641 |
T |
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| Q |
119 |
acttaattcaatttgatttgattagggttttattagtaaggttttaagattaggagccggtatcgtgcaattttatttgttgcatgttaatagttgatgt |
218 |
Q |
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| T |
41256642 |
acttaattcaatttgatttgattagggttttattagtaaggttttaagattaggagccggtatcgtgcaattttatttgttgcatgttaatagttgatgt |
41256741 |
T |
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| Q |
219 |
gacacagtcacaatcctgaattgaatttgatttgatataaggtttcattttttagcttttcagattaggagctggtatcatgtagctatgtttgtagcat |
318 |
Q |
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| T |
41256742 |
gacacagtcacaatcctgaattgaatttgatttgatataaggtttcattttttagcttttcagattaggagctggtatcatgcagctgtgtttgtagcat |
41256841 |
T |
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| Q |
319 |
gttagtagttgttgtgacacaacttaatccttaattgaatttgattt |
365 |
Q |
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| T |
41256842 |
gttagtagttgttgtgacacaacacaatcc-taattgaatttgattt |
41256887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 41256333 - 41256506
Alignment:
| Q |
19 |
ggtgagcttgctgcttattctgctactgctgctactaatgatgaactgcctgacctgtatcagattattgctttgtcagatagagttcaaggtaacaatc |
118 |
Q |
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| T |
41256333 |
ggtgagcttgctgcttattctgctactgctgctactaatgatgaactgcctgacctgtatcagattattgctttgtcagatagagttcaaggtaacaatc |
41256432 |
T |
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| Q |
119 |
acttaattcaatttgatttgattagggttttattagtaaggttttaagattaggagccggtatcgtgcaatttt |
192 |
Q |
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| T |
41256433 |
acttaattcaatttgatttgattagggttttattagtaaggttttaagattaggagccggtatcgtgcaatttt |
41256506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 41256928 - 41256994
Alignment:
| Q |
307 |
tgtttgtagcatgttagtagttgttgtgacacaacttaatccttaattgaatttgatttgatttgat |
373 |
Q |
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| T |
41256928 |
tgtttgtagcatgttagaagttgttgtgacagaacacaatcctttatcgaatttgatttggtttgat |
41256994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 330 - 373
Target Start/End: Original strand, 41257084 - 41257127
Alignment:
| Q |
330 |
ttgtgacacaacttaatccttaattgaatttgatttgatttgat |
373 |
Q |
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| T |
41257084 |
ttgtgacacaacacaatccttaattgaatttgatttgatttgat |
41257127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 41257151 - 41257203
Alignment:
| Q |
162 |
ttaagattaggagccggtatcgtgcaattttatttgttgcatgttaatagttg |
214 |
Q |
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| T |
41257151 |
ttaaaattaggagccggtattgtgcaattgtatttgtagcatgttgatagttg |
41257203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 41256983 - 41257075
Alignment:
| Q |
243 |
atttgatttgatataaggtttcatttttt-agcttttcagattaggagctggtatcatgtagctatgtttgtagcatgttagtagttgttgtga |
335 |
Q |
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| T |
41256983 |
atttggtttgatttaaggtttcattttttgagctattaagattatgagct-gtatcctgcaattgtgtttgtagcatgctactagttgttgtga |
41257075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 41256646 - 41256777
Alignment:
| Q |
237 |
aattgaatttgatttgatataaggtttcattttttagcttttcagattaggagctggtatcatgtagctatgtttgtagcatgttagtagttgttgtgac |
336 |
Q |
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| T |
41256646 |
aattcaatttgatttgat-tagggttttattagtaaggttttaagattaggagccggtatcgtgcaattttatttgttgcatgttaatagttgatgtgac |
41256744 |
T |
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| Q |
337 |
acaa-cttaatccttaattgaatttgatttgat |
368 |
Q |
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| T |
41256745 |
acagtcacaatcctgaattgaatttgatttgat |
41256777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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