View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_70 (Length: 380)

Name: NF11930_low_70
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_70
NF11930_low_70
[»] chr1 (8 HSPs)
chr1 (16-262)||(48317583-48317829)
chr1 (325-362)||(48317903-48317940)
chr1 (37-73)||(29230072-29230108)
chr1 (38-72)||(26462662-26462696)
chr1 (35-72)||(41017421-41017458)
chr1 (38-71)||(43328475-43328508)
chr1 (38-74)||(36251264-36251300)
chr1 (38-70)||(47126274-47126306)
[»] chr3 (4 HSPs)
chr3 (37-73)||(21110479-21110515)
chr3 (37-72)||(32166200-32166235)
chr3 (37-72)||(49636843-49636878)
chr3 (38-72)||(18180547-18180581)
[»] chr7 (6 HSPs)
chr7 (41-72)||(31837762-31837793)
chr7 (37-70)||(13803675-13803708)
chr7 (41-77)||(8204401-8204437)
chr7 (41-77)||(8216878-8216914)
chr7 (37-77)||(23249462-23249502)
chr7 (36-72)||(31753779-31753815)
[»] chr6 (5 HSPs)
chr6 (38-73)||(33076416-33076451)
chr6 (38-72)||(34625742-34625776)
chr6 (39-72)||(8148129-8148162)
chr6 (41-77)||(10335388-10335424)
chr6 (38-70)||(17422274-17422306)
[»] chr4 (9 HSPs)
chr4 (37-72)||(2976701-2976736)
chr4 (37-72)||(8457932-8457967)
chr4 (38-72)||(20119953-20119987)
chr4 (38-72)||(31277041-31277075)
chr4 (38-72)||(32369929-32369963)
chr4 (38-72)||(35212744-35212778)
chr4 (43-72)||(3457950-3457979)
chr4 (40-72)||(18783987-18784019)
chr4 (36-72)||(19262941-19262977)
[»] chr2 (4 HSPs)
chr2 (36-71)||(11781581-11781616)
chr2 (36-71)||(33498634-33498669)
chr2 (41-70)||(19152259-19152288)
chr2 (35-71)||(3103540-3103576)
[»] chr8 (5 HSPs)
chr8 (37-71)||(2517114-2517148)
chr8 (37-67)||(34259817-34259847)
chr8 (37-74)||(3066049-3066086)
chr8 (37-69)||(25799155-25799187)
chr8 (39-71)||(43534933-43534965)
[»] chr5 (3 HSPs)
chr5 (37-71)||(39828473-39828507)
chr5 (35-72)||(28322246-28322283)
chr5 (35-67)||(1346270-1346302)
[»] scaffold0147 (1 HSPs)
scaffold0147 (43-72)||(37448-37477)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 48317583 - 48317829
Alignment:
Q  16 ggacatcagacattaaggatagtaataatttgagaaaatgaaataattgaatgtaataagatatattatcattgtgttagtaaagtgtatatgctgctgc 115  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  48317583 ggacaccagacattaaggatcgtaataatttgagaaaatgaaataattgaatgtaataacatatattatcattgtgttagtgaagtgtatatgctgctgc 48317682  T
Q  116 atagagagggaattcacacatacagatactgcaaatggtgtaggtggccaagctctgagcctagagatccagaaagaccagcattacccaagtctctgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48317683 atagagagggaattcacacatacagatactgcaaatggtgtaggtggccaagctctgagcctagagatccagaaagaccagcattacccaagtctctgaa 48317782  T
Q  216 atacaaagatgagacaactgcttagaaagccctaacaaacttaatta 262  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  48317783 atacaaagatgagacaactgattagaaagccctaacaaacttaatta 48317829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 48317903 - 48317940
Alignment:
Q  325 ccttacaagcgtgacacacggttgttggagtcacatgt 362  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48317903 ccttacaagcgtgacacacggttgttggagtcacatgt 48317940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 29230072 - 29230108
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaata 73  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29230072 gtaataatttgagaaaatgacataattgaatgtaata 29230108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 26462696 - 26462662
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    ||||||||| |||||||||||||||||||||||||    
T  26462696 taataatttaagaaaatgaaataattgaatgtaat 26462662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 41017458 - 41017421
Alignment:
Q  35 tagtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  41017458 tagtaataatttgagaaaatgacataatttaatgtaat 41017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 43328475 - 43328508
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaa 71  Q
    |||||||||||||||||||||||||| |||||||    
T  43328475 taataatttgagaaaatgaaataatttaatgtaa 43328508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 36251300 - 36251264
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaataa 74  Q
    |||||||||||||||||||| |||| |||||||||||    
T  36251300 taataatttgagaaaatgaactaatagaatgtaataa 36251264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 47126274 - 47126306
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgta 70  Q
    ||||||||| |||||||||||||||||||||||    
T  47126274 taataatttaagaaaatgaaataattgaatgta 47126306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 21110515 - 21110479
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaata 73  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21110515 gtaataatttgagaaaatgacataattgaatgtaata 21110479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 32166235 - 32166200
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||| |||||||||||||||    
T  32166235 gtaataatttgagaaaatgacataattgaatgtaat 32166200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 49636878 - 49636843
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    ||||||||||||||||||||| ||||||||||||||    
T  49636878 gtaataatttgagaaaatgaattaattgaatgtaat 49636843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 18180547 - 18180581
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||||||||| ||||||||    
T  18180547 taataatttgagaaaatgaaataattaaatgtaat 18180581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 31837762 - 31837793
Alignment:
Q  41 taatttgagaaaatgaaataattgaatgtaat 72  Q
    ||||||||||||||||||||||||||||||||    
T  31837762 taatttgagaaaatgaaataattgaatgtaat 31837793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 13803675 - 13803708
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgta 70  Q
    ||||||||||||||||||||||||||||| ||||    
T  13803675 gtaataatttgagaaaatgaaataattgagtgta 13803708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 8204437 - 8204401
Alignment:
Q  41 taatttgagaaaatgaaataattgaatgtaataagat 77  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  8204437 taatttgagaaaatgatataattgaatgtaatcagat 8204401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 8216914 - 8216878
Alignment:
Q  41 taatttgagaaaatgaaataattgaatgtaataagat 77  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  8216914 taatttgagaaaatgatataattgaatgtaatcagat 8216878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 23249502 - 23249462
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaataagat 77  Q
    |||||||||| ||||||||||||||||| ||||||| ||||    
T  23249502 gtaataatttaagaaaatgaaataattgtatgtaatcagat 23249462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 31753815 - 31753779
Alignment:
Q  36 agtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||| |||||||||||||| |||||||||||||||||    
T  31753815 agtagtaatttgagaaaattaaataattgaatgtaat 31753779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 33076416 - 33076451
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaata 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  33076416 taataatttgagaaaatgacataattgaatgtaata 33076451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 34625742 - 34625776
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||| ||||||||||||||    
T  34625742 taataatttgagaaaatgaattaattgaatgtaat 34625776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 8148129 - 8148162
Alignment:
Q  39 aataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||| |||||||||||||||    
T  8148129 aataatttgagaaaatgacataattgaatgtaat 8148162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 10335424 - 10335388
Alignment:
Q  41 taatttgagaaaatgaaataattgaatgtaataagat 77  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  10335424 taatttgagaaaatgacataattgaatgtaatcagat 10335388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 17422306 - 17422274
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgta 70  Q
    ||||||||||||||||||| |||||||||||||    
T  17422306 taataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 2976701 - 2976736
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||| |||||||||||||||    
T  2976701 gtaataatttgagaaaatgacataattgaatgtaat 2976736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 8457932 - 8457967
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||| |||||||||||||||    
T  8457932 gtaataatttgagaaaatgacataattgaatgtaat 8457967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 20119953 - 20119987
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||||||||| ||||||||    
T  20119953 taataatttgagaaaatgaaataatttaatgtaat 20119987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 31277075 - 31277041
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||| ||||||||||||||    
T  31277075 taataatttgagaaaatgaactaattgaatgtaat 31277041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 32369963 - 32369929
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||||| ||||||||||||||    
T  32369963 taataatttgagaaaatgaattaattgaatgtaat 32369929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 35212778 - 35212744
Alignment:
Q  38 taataatttgagaaaatgaaataattgaatgtaat 72  Q
    ||||||||||||||||| |||||||||||||||||    
T  35212778 taataatttgagaaaattaaataattgaatgtaat 35212744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 3457979 - 3457950
Alignment:
Q  43 atttgagaaaatgaaataattgaatgtaat 72  Q
    ||||||||||||||||||||||||||||||    
T  3457979 atttgagaaaatgaaataattgaatgtaat 3457950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 18783987 - 18784019
Alignment:
Q  40 ataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||||| ||||||||||||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaat 18784019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 19262977 - 19262941
Alignment:
Q  36 agtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||||||||||||||| |||| |||||||||||||||    
T  19262977 agtaataatttgagaagatgacataattgaatgtaat 19262941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 11781616 - 11781581
Alignment:
Q  36 agtaataatttgagaaaatgaaataattgaatgtaa 71  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11781616 agtaataatttgagaaaatgaaatatttgaatgtaa 11781581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 33498634 - 33498669
Alignment:
Q  36 agtaataatttgagaaaatgaaataattgaatgtaa 71  Q
    |||||||||||||||||||| |||||||||||||||    
T  33498634 agtaataatttgagaaaatggaataattgaatgtaa 33498669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 19152259 - 19152288
Alignment:
Q  41 taatttgagaaaatgaaataattgaatgta 70  Q
    ||||||||||||||||||||||||||||||    
T  19152259 taatttgagaaaatgaaataattgaatgta 19152288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 3103576 - 3103540
Alignment:
Q  35 tagtaataatttgagaaaatgaaataattgaatgtaa 71  Q
    |||||||||||||||||||| | ||||||||||||||    
T  3103576 tagtaataatttgagaaaataagataattgaatgtaa 3103540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 2517114 - 2517148
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaa 71  Q
    ||||||||||||||||||||| |||||||||||||    
T  2517114 gtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 34259847 - 34259817
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaat 67  Q
    |||||||||||||||||||||||||||||||    
T  34259847 gtaataatttgagaaaatgaaataattgaat 34259817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 3066049 - 3066086
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaataa 74  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  3066049 gtaataatttgagaaaatggattaattgaatgtaataa 3066086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 25799155 - 25799187
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgt 69  Q
    ||||||||||||||||||||| |||||||||||    
T  25799155 gtaataatttgagaaaatgaattaattgaatgt 25799187  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 43534933 - 43534965
Alignment:
Q  39 aataatttgagaaaatgaaataattgaatgtaa 71  Q
    |||||||||||||||||||||| ||||||||||    
T  43534933 aataatttgagaaaatgaaatatttgaatgtaa 43534965  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 39828473 - 39828507
Alignment:
Q  37 gtaataatttgagaaaatgaaataattgaatgtaa 71  Q
    ||||||||||||||| |||||||||||||||||||    
T  39828473 gtaataatttgagaatatgaaataattgaatgtaa 39828507  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 28322246 - 28322283
Alignment:
Q  35 tagtaataatttgagaaaatgaaataattgaatgtaat 72  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  28322246 tagtgataatttgagaaaatgaattaattgaatgtaat 28322283  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 1346302 - 1346270
Alignment:
Q  35 tagtaataatttgagaaaatgaaataattgaat 67  Q
    |||||||||||| ||||||||||||||||||||    
T  1346302 tagtaataatttaagaaaatgaaataattgaat 1346270  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 37477 - 37448
Alignment:
Q  43 atttgagaaaatgaaataattgaatgtaat 72  Q
    ||||||||||||||||||||||||||||||    
T  37477 atttgagaaaatgaaataattgaatgtaat 37448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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