View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_72 (Length: 373)

Name: NF11930_low_72
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_72
NF11930_low_72
[»] chr4 (2 HSPs)
chr4 (84-295)||(23440152-23440374)
chr4 (26-198)||(48567306-48567475)
[»] chr2 (2 HSPs)
chr2 (27-198)||(1946007-1946177)
chr2 (28-191)||(1945832-1945995)
[»] chr3 (3 HSPs)
chr3 (20-166)||(31424502-31424647)
chr3 (135-194)||(823216-823274)
chr3 (3-55)||(1652562-1652614)
[»] chr8 (3 HSPs)
chr8 (78-260)||(17819533-17819719)
chr8 (68-161)||(31503079-31503171)
chr8 (8-54)||(17720398-17720444)
[»] chr1 (4 HSPs)
chr1 (57-198)||(9081207-9081349)
chr1 (27-161)||(9613087-9613220)
chr1 (2-55)||(32882709-32882763)
chr1 (8-55)||(34775214-34775262)
[»] chr5 (4 HSPs)
chr5 (8-55)||(30097675-30097723)
chr5 (1-66)||(24071945-24072011)
chr5 (10-55)||(25657813-25657858)
chr5 (27-55)||(6159829-6159857)
[»] chr7 (1 HSPs)
chr7 (20-55)||(26385860-26385895)
[»] chr6 (2 HSPs)
chr6 (1-66)||(17278146-17278212)
chr6 (27-55)||(20500295-20500323)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 84 - 295
Target Start/End: Original strand, 23440152 - 23440374
Alignment:
Q  84 taaccaagacttaccttcaacatccaagagaacaacaactactaaaactccacttcaccacctaaatcaaactccatcataaaacgaccactgaaacaac 183  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23440152 taaccaagacttaccttcaacacccaaaaaaacaacaactactaaaaccccacttcaccacctaaatcaaactccatcataaaacgaccactgaaacaac 23440251  T
Q  184 gaaatccataaaccct-----------ctgctcacccaaaattacactcctctaaatcaaataaccccttctcatcaccttagctgaggcacacctgaaa 272  Q
    ||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23440252 gaaatccataaaccctcttccctctcgctgctcacccaaaattacactcctctaaatcaaataaccccttctcatcaccttagctgaggcacacctgaaa 23440351  T
Q  273 ggattctattccaacacgtaggc 295  Q
    || | ||||||||||||||||||    
T  23440352 gggtcctattccaacacgtaggc 23440374  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 48567306 - 48567475
Alignment:
Q  26 cgtatataggcggaacacccaaaataaacattataagagacgcaatacactcatcatctaaccaagacttaccttcaacatccaa-gagaacaacaacta 124  Q
    ||||||||||||||||||| ||||| ||||  |||| ||||   | |||| ||||| ||||||||||  |||||| |||| | || |||||||||||  |    
T  48567306 cgtatataggcggaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctacctt-aacacctaaagagaacaacaatca 48567404  T
Q  125 ctaaaactccacttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataaaccc 198  Q
    | ||||| | |||||||||||||||||||||| |||||| ||||| | ||||||  ||||||||||||||||||    
T  48567405 ccaaaac-caacttcaccacctaaatcaaacttcatcattaaacggcaactgaa--aacgaaatccataaaccc 48567475  T

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Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 1946177 - 1946007
Alignment:
Q  27 gtatataggcggaacacccaaaataaacattataagagacgcaatacactcatcatctaaccaagacttaccttcaacatccaagagaacaacaactact 126  Q
    ||||||||  |||||| |||||| ||| || |||| |||| ||||||| |||||| |||||||| || ||||||||||||||||| |||||||||| ||     
T  1946177 gtatatagatggaacatccaaaagaaatatcataaaagacacaatacaatcatcacctaaccaaaacctaccttcaacatccaagcgaacaacaaccacc 1946078  T
Q  127 aaaactccacttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataaaccc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  1946077 aaaactccacttcaccacctaaatcaaactccatcataaaacggccact-aaaaaacgaaatccataaaccc 1946007  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 1945832 - 1945995
Alignment:
Q  28 tatataggcggaacacccaaaataaacattataagagacgcaatacactcatcatctaaccaagacttaccttcaacatccaagagaacaacaactacta 127  Q
    |||||||||| ||||||||||| ||| |  |||| |||| |||||||  ||||| |||||||| || ||| |||||||  |||  |||||||||| || |    
T  1945832 tatataggcg-aacacccaaaagaaataccataaaagacacaatacaaccatcacctaaccaaaacctactttcaacactcaaacgaacaacaaccacca 1945930  T
Q  128 aaactccacttcaccacctaaatcaaa--ctccatcataaaacgaccactgaaacaacgaaatcca 191  Q
    |||||||||||||||||||||||||||  ||||||||||||||| ||||| ||| |||||||||||    
T  1945931 aaactccacttcaccacctaaatcaaactctccatcataaaacggccact-aaaaaacgaaatcca 1945995  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 31424647 - 31424502
Alignment:
Q  20 agacgacgtatataggcggaacacccaaaataaacattataagagacgcaatacactcatcatctaaccaagacttaccttcaacatccaagagaacaac 119  Q
    ||||| ||||||||||||||||| ||||| ||||||  |||| | || ||| ||| |||||| ||||||||||  ||| ||||||| |||| ||||||||    
T  31424647 agacgtcgtatataggcggaacatccaaattaaacaccataaaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaaagaacaac 31424548  T
Q  120 aactactaaaactccacttcaccacctaaatcaaactccatcataaa 166  Q
    ||  || ||||| | ||||||||||||||||||||||||||||||||    
T  31424547 aatcaccaaaac-caacttcaccacctaaatcaaactccatcataaa 31424502  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 823216 - 823274
Alignment:
Q  135 acttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataa 194  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| ||||| ||||||||    
T  823216 acttcaccacctaaaacaaactccatcacaaaacaaccactgaaa-aacgatatccataa 823274  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 1652562 - 1652614
Alignment:
Q  3 cagaaaatacaaactacagacgacgtatataggcggaacacccaaaataaaca 55  Q
    |||||| ||||||||| || || |||||||||||||||||||| |||||||||    
T  1652562 cagaaagtacaaactaaaggcgtcgtatataggcggaacacccgaaataaaca 1652614  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 17819533 - 17819719
Alignment:
Q  78 atcatctaaccaagacttaccttcaacatccaagagaacaacaactactaaaactccacttcaccacctaaatcaaactccatcataaaacgaccactga 177  Q
    |||| |||||||| || ||||||||||| |||  |||||| |||| || ||||| | |||||||||||||||||||||||||||   |||| ||||||||    
T  17819533 atcacctaaccaaaacctaccttcaacacccataagaaca-caaccaccaaaac-caacttcaccacctaaatcaaactccatc-gcaaacaaccactga 17819629  T
Q  178 aacaacgaaatccataaacc---------ctctgctcacccaaaattacactcctctaaatcaaataaccccttctcatcaccttagctgag 260  Q
    |  |||||||||||||||||         | |||||||||| |||  | |||||||||||||||| |||| |||||| ||||||||||||||    
T  17819630 a--aacgaaatccataaacccccttcgctcgctgctcaccccaaaaaaaactcctctaaatcaaacaacctcttctcgtcaccttagctgag 17819719  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 31503079 - 31503171
Alignment:
Q  68 caatacactcatcatctaaccaagacttaccttcaacatccaagagaacaacaactactaaaactccacttcaccacctaaatcaaactccatc 161  Q
    |||||||| |||||  || ||||||| |||||||||||  || |||||||| ||| || ||||| | ||||| |||||||||||||||||||||    
T  31503079 caatacacccatcacatacccaagacctaccttcaacacgcatgagaacaagaaccaccaaaac-caacttcgccacctaaatcaaactccatc 31503171  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 17720398 - 17720444
Alignment:
Q  8 aatacaaactacagacgacgtatataggcggaacacccaaaataaac 54  Q
    ||||||||||| || || ||||||||||| |||||||||||||||||    
T  17720398 aatacaaactaaaggcgccgtatataggcagaacacccaaaataaac 17720444  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 9081207 - 9081349
Alignment:
Q  57 tataagagacgcaatacactcatcatctaaccaagacttaccttcaacatccaaga-gaacaacaactactaaaactccacttcaccacctaaatcaaac 155  Q
    ||||| |||| |||||||| |||||  ||| |||||  ||||||||||| |||||  |||||||||  |  ||||| | | ||  |||||||||||||||    
T  9081207 tataaaagacacaatacacccatcacttaatcaagatctaccttcaacacccaagctgaacaacaagcatcaaaaccctaatttgccacctaaatcaaac 9081306  T
Q  156 tccatcataaaacgaccactgaaacaacgaaatccataaaccc 198  Q
    || ||||||||  ||||||||||| ||||||||||||||||||    
T  9081307 tctatcataaatagaccactgaaaaaacgaaatccataaaccc 9081349  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 9613087 - 9613220
Alignment:
Q  27 gtatataggcggaacacccaaaataaacattataagagacgcaatacactcatcatctaaccaagacttaccttcaacatccaagagaacaacaactact 126  Q
    |||||||||||||  ||| |||| |||||  |||| | || ||| |||| ||||| ||||||||||| ||||||||||| |||| |||||||  || ||     
T  9613087 gtatataggcggatgaccaaaaagaaacaccataaaatacacaaaacacccatcaactaaccaagacctaccttcaacacccaatagaacaatgaccac- 9613185  T
Q  127 aaaactccacttcaccacctaaatcaaactccatc 161  Q
     |||| | |||||||||||||||||||||| ||||    
T  9613186 caaacccaacttcaccacctaaatcaaacttcatc 9613220  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 32882763 - 32882709
Alignment:
Q  2 tcagaaaatacaaactacagacgacgtatataggcggaacaccc-aaaataaaca 55  Q
    ||||||||||||||||| || || ||||||||||| |||||||| ||||||||||    
T  32882763 tcagaaaatacaaactaaaggcgccgtatataggcagaacacccgaaaataaaca 32882709  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 34775262 - 34775214
Alignment:
Q  8 aatacaaactacagacgacgtatataggcggaacaccc-aaaataaaca 55  Q
    ||||||||||| || || |||||||||||||||||||| ||||||||||    
T  34775262 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 34775214  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 30097723 - 30097675
Alignment:
Q  8 aatacaaactacagacgacgtatataggcggaacaccc-aaaataaaca 55  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  30097723 aatacaaactaaagacgccgtatataggcggaacacccgaaaataaaca 30097675  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24071945 - 24072011
Alignment:
Q  1 ttcagaaaatacaaactacagacgacgtatataggcggaacaccc-aaaataaacattataagagac 66  Q
    |||||| |||||||||||  | || |||||||||||||||||||| ||||||||||| |||| ||||    
T  24071945 ttcagataatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaagac 24072011  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 25657813 - 25657858
Alignment:
Q  10 tacaaactacagacgacgtatataggcggaacacccaaaataaaca 55  Q
    |||||||||||| || ||||||||||| ||||||| ||||||||||    
T  25657813 tacaaactacaggcgccgtatataggcagaacacctaaaataaaca 25657858  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 6159857 - 6159829
Alignment:
Q  27 gtatataggcggaacacccaaaataaaca 55  Q
    |||||||||||||||||||||||||||||    
T  6159857 gtatataggcggaacacccaaaataaaca 6159829  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 26385860 - 26385895
Alignment:
Q  20 agacgacgtatataggcggaacacccaaaataaaca 55  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26385860 agacgccgtatataggcggaacacccaaaataaaca 26385895  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17278146 - 17278212
Alignment:
Q  1 ttcagaaaatacaaactacagacgacgtatataggcggaacaccc-aaaataaacattataagagac 66  Q
    |||||| ||||||| ||| || || |||||||||||||||||||| ||||||||||| |||| ||||    
T  17278146 ttcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaacatcataaaagac 17278212  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 20500323 - 20500295
Alignment:
Q  27 gtatataggcggaacacccaaaataaaca 55  Q
    |||||||||||||||||||||||||||||    
T  20500323 gtatataggcggaacacccaaaataaaca 20500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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