View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_73 (Length: 371)

Name: NF11930_low_73
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_73
NF11930_low_73
[»] chr6 (5 HSPs)
chr6 (1-349)||(8349372-8349720)
chr6 (276-319)||(2117486-2117529)
chr6 (271-308)||(3738195-3738232)
chr6 (273-326)||(33911223-33911276)
chr6 (289-325)||(32515061-32515097)
[»] chr7 (6 HSPs)
chr7 (275-314)||(25297054-25297093)
chr7 (274-324)||(8094384-8094434)
chr7 (271-324)||(30496783-30496836)
chr7 (271-327)||(39542239-39542295)
chr7 (284-324)||(13960675-13960715)
chr7 (274-318)||(32791687-32791731)
[»] chr2 (4 HSPs)
chr2 (274-324)||(11513974-11514024)
chr2 (285-324)||(36677730-36677769)
chr2 (270-320)||(33087562-33087612)
chr2 (274-322)||(41240790-41240838)
[»] chr8 (5 HSPs)
chr8 (274-324)||(4763972-4764022)
chr8 (274-323)||(9700080-9700129)
chr8 (271-321)||(1664450-1664500)
chr8 (274-324)||(7918723-7918773)
chr8 (271-324)||(16162838-16162891)
[»] chr4 (3 HSPs)
chr4 (271-319)||(25896867-25896915)
chr4 (271-324)||(50746053-50746106)
chr4 (295-331)||(49004004-49004040)
[»] chr5 (2 HSPs)
chr5 (285-324)||(10152412-10152451)
chr5 (271-324)||(26516485-26516538)
[»] chr3 (8 HSPs)
chr3 (274-321)||(45590732-45590779)
chr3 (285-324)||(47584528-47584567)
chr3 (274-324)||(44295605-44295655)
chr3 (274-319)||(27795955-27796000)
chr3 (271-324)||(44014737-44014790)
chr3 (273-321)||(13709777-13709825)
chr3 (278-326)||(42530336-42530384)
chr3 (276-320)||(42809375-42809419)
[»] chr1 (5 HSPs)
chr1 (274-321)||(6659761-6659808)
chr1 (277-324)||(43371836-43371883)
chr1 (271-320)||(32515380-32515429)
chr1 (274-318)||(1662657-1662701)
chr1 (271-324)||(23370241-23370296)
[»] scaffold0199 (1 HSPs)
scaffold0199 (271-321)||(6891-6941)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 8349372 - 8349720
Alignment:
Q  1 taggtcattgtaatggccatttggacagttgaattgtttgtagtttcctgattttccatttgtaggacacattgatagatcatcacatggtgtacatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8349372 taggtcattgtaatggccatttggacagttgaattgtttgtagtttcctgattttccatttgtaggacacattgatagatcatcacatggtgtacatttt 8349471  T
Q  101 actaggaatggtagaccatattgacatgctgatgtgaagattgatactgagagacttagaagaagcttgtatatttttcctttcctgcaataaagtaaaa 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8349472 actaggaatggaagaccatattgacatgctgatgtgaagattgatactgagagacttagaagaagcttgtatatttttcctttcctgcaataaagtaaaa 8349571  T
Q  201 attatcatcattaatcacatactctaaagaaaagttaatttgagttgtgatacctttagggctgtttggaagtttatctactagcataagcacatgtgag 300  Q
    ||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8349572 attctaatcattaatcacataatctaaagaaaagttaatttgagctgtgatacctttagggctgtttggaagtttatctactagcataagtacatgtgag 8349671  T
Q  301 actatttaagagagcttatgaaaataagttagtagtagcatatgtccat 349  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8349672 actattttagagagcttatgaaaataagttagtagtagcatatgtccat 8349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 2117529 - 2117486
Alignment:
Q  276 atctactagcataagcacatgtgagactatttaagagagcttat 319  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||    
T  2117529 atctactagcataagcacctgtgagactattcaagtgagcttat 2117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 3738232 - 3738195
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactattta 308  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  3738232 agtttatctactagcataagcacttgtgagactgttta 3738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 33911223 - 33911276
Alignment:
Q  273 tttatctactagcataagcacatgtgagactatttaagagagcttatgaaaata 326  Q
    |||||||||||||| ||||||  |||| ||| ||||||||| ||||||||||||    
T  33911223 tttatctactagcacaagcactcgtgaaactgtttaagagatcttatgaaaata 33911276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 32515061 - 32515097
Alignment:
Q  289 agcacatgtgagactatttaagagagcttatgaaaat 325  Q
    |||||||||||||||||||| || |||||||||||||    
T  32515061 agcacatgtgagactatttaggaaagcttatgaaaat 32515097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 25297093 - 25297054
Alignment:
Q  275 tatctactagcataagcacatgtgagactatttaagagag 314  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25297093 tatctactagcataagcacatgtgagactatttaagagag 25297054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 8094434 - 8094384
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||||||||||||||| ||||||||||||| |||||  |||||||||    
T  8094434 ttatctactagcataagcacttgtgagactatttgagagattttatgaaaa 8094384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 30496836 - 30496783
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||||||||||||||||||| | || ||||||| || ||||||||||||||||    
T  30496836 agtttatctactagcataagcccttgcgagactacttgagagagcttatgaaaa 30496783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 39542239 - 39542295
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaataa 327  Q
    ||||||||||||||||||||||| || |||||  ||| |||||||||||| ||||||    
T  39542239 agtttatctactagcataagcacttgcgagacagttttagagagcttatggaaataa 39542295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 13960675 - 13960715
Alignment:
Q  284 gcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||||| || |||||||||| ||||||||||||||||    
T  13960675 gcataagcacttgcgagactatttgagagagcttatgaaaa 13960715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 32791687 - 32791731
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagctta 318  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||||    
T  32791687 ttatctactagcataagcactagtgagactatttaggagaactta 32791731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 11514024 - 11513974
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  11514024 ttatctactagcataagcacttgtgagactgttttagagagcttatgaaaa 11513974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 36677769 - 36677730
Alignment:
Q  285 cataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  36677769 cataagcacttgtgagactattcaagagagcttatgaaaa 36677730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 33087562 - 33087612
Alignment:
Q  270 aagtttatctactagcataagcacatgtgagactatttaagagagcttatg 320  Q
    ||||||||| ||||||||||||||||||| |||||||| ||| || |||||    
T  33087562 aagtttatccactagcataagcacatgtgtgactatttgagatagtttatg 33087612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 41240790 - 41240838
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaa 322  Q
    |||| ||||||||||||||  ||||| ||| ||||||||||||||||||    
T  41240790 ttatatactagcataagcatttgtgaaactgtttaagagagcttatgaa 41240838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 4764022 - 4763972
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||| |||||||||||||| | ||||||||||||||||||||| ||||||    
T  4764022 ttatccactagcataagcacctatgagactatttaagagagcttttgaaaa 4763972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 9700129 - 9700080
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaa 323  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||| |||||    
T  9700129 ttatctactagcataaacacttgtgagactatttgagagagcttgtgaaa 9700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 1664500 - 1664450
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatga 321  Q
    ||||||||||||||||||| ||| ||||||||| |||  ||||||||||||    
T  1664500 agtttatctactagcataaacacttgtgagactgtttgggagagcttatga 1664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 7918723 - 7918773
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||||||||||| ||| ||||||||| |||  |||||||||||||||    
T  7918723 ttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaa 7918773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 16162891 - 16162838
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||| | ||||||||||    
T  16162891 agtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaa 16162838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 25896915 - 25896867
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttat 319  Q
    ||||||||||||||||| ||||| ||||||||| |||| ||||||||||    
T  25896915 agtttatctactagcattagcacttgtgagactgtttaggagagcttat 25896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 50746106 - 50746053
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||||||| |||||||||| |||||||||||||  | ||| |||||||||    
T  50746106 agtttatctacttgcataagcacttgtgagactatttgtgtgagtttatgaaaa 50746053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 49004004 - 49004040
Alignment:
Q  295 tgtgagactatttaagagagcttatgaaaataagtta 331  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  49004004 tgtgagactatttgagagaacttatgaaaataagtta 49004040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 10152451 - 10152412
Alignment:
Q  285 cataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  10152451 cataagcacatgtgagactattttggagagcttatgaaaa 10152412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 26516538 - 26516485
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||||| |||| |||||||||| |||| || | ||||||||||||||||||||    
T  26516538 agtttatttactggcataagcacctgtgggaatgtttaagagagcttatgaaaa 26516485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 45590779 - 45590732
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatga 321  Q
    |||||||||||||||||||| ||||||||| |||  ||||||||||||    
T  45590779 ttatctactagcataagcacttgtgagactgtttgggagagcttatga 45590732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 47584567 - 47584528
Alignment:
Q  285 cataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  47584567 cataagcacttgtgagactatttgagagagcttatgaaaa 47584528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 44295655 - 44295605
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||    
T  44295655 ttatctacaagcataagcacttgtgatactatttgagagaacttatgaaaa 44295605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 27795955 - 27796000
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttat 319  Q
    ||||||||| |||||||||| ||||| ||| |||||||||||||||    
T  27795955 ttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 44014737 - 44014790
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||| | ||||||||||    
T  44014737 agtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaa 44014790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 13709777 - 13709825
Alignment:
Q  273 tttatctactagcataagcacatgtgagactatttaagagagcttatga 321  Q
    |||||||||| | |||||||| |||||||||||||| ||||| ||||||    
T  13709777 tttatctactgggataagcacttgtgagactatttaggagagtttatga 13709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 42530384 - 42530336
Alignment:
Q  278 ctactagcataagcacatgtgagactatttaagagagcttatgaaaata 326  Q
    |||||||||||||||| ||||||||| ||| ||| |||||||| |||||    
T  42530384 ctactagcataagcacttgtgagactgtttcagaaagcttatggaaata 42530336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 42809419 - 42809375
Alignment:
Q  276 atctactagcataagcacatgtgagactatttaagagagcttatg 320  Q
    |||||||||||| ||||| |||||||| |||||| ||||||||||    
T  42809419 atctactagcattagcacttgtgagacaatttaaaagagcttatg 42809375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 6659808 - 6659761
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagcttatga 321  Q
    |||||||||||||||||||| |||||||||||||  || |||||||||    
T  6659808 ttatctactagcataagcacttgtgagactatttgggatagcttatga 6659761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 43371836 - 43371883
Alignment:
Q  277 tctactagcataagcacatgtgagactatttaagagagcttatgaaaa 324  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  43371836 tctactggcataagcacttgtgagactgtttgagagagcttatgaaaa 43371883  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 32515380 - 32515429
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatg 320  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||||    
T  32515380 agtttatctactaacataagcacttgtgagactgtttgggagagcttatg 32515429  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 1662701 - 1662657
Alignment:
Q  274 ttatctactagcataagcacatgtgagactatttaagagagctta 318  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||    
T  1662701 ttatctactagcataagtacatgcgagactatttgcgagagctta 1662657  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 23370241 - 23370296
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactattt--aagagagcttatgaaaa 324  Q
    ||||||| ||| ||||||||||| ||||||||| |||  |||||||||||||||||    
T  23370241 agtttatgtacaagcataagcacttgtgagactgtttaaaagagagcttatgaaaa 23370296  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 6941 - 6891
Alignment:
Q  271 agtttatctactagcataagcacatgtgagactatttaagagagcttatga 321  Q
    ||||||||||||||||||| ||| ||||||||| |||  ||||||||||||    
T  6941 agtttatctactagcataaacacttgtgagactgtttgggagagcttatga 6891  T

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