View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_74 (Length: 367)
Name: NF11930_low_74
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 56263227 - 56263561
Alignment:
| Q |
18 |
acgaaccaggatgatattgttctcccttaaaaagatcaactgctttgtactcatacttgagacctttgaggtttagagcaattcgaactcggaaggcaca |
117 |
Q |
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| T |
56263227 |
acgaaccaggatgatattgttctcccttaaaaagatcaactgctttgtactcgtacttgagacctttgaggtttagagcaattcgaactcggaaggcaca |
56263326 |
T |
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| Q |
118 |
tgaacttctccaatatgaatacagaatcagcttactaatactattatgttgttgttcttcacttgcacttgcctagtttgaatcaacaaaacataatgag |
217 |
Q |
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| T |
56263327 |
tgaacttctccaatatgaatacagaatcagcttactaatactattatgttgttgttcttcacttgaacttgcctagtttgaatcaacaaaacataatgag |
56263426 |
T |
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| Q |
218 |
taagtaaataaatgaatcaaagaagaagatgcaaagcataccataccattgagattgagttgctgctaagtgccgtgcttaaacttccaacttcaaacaa |
317 |
Q |
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| T |
56263427 |
taagtaaataaatgaatcaaagaagaagatgcaaagcataccataccattgagattgagttgctgctaagtgccgtgcttaaacttccaacttcaaacaa |
56263526 |
T |
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| Q |
318 |
atcagagtatactagaagactctgcgggtttggtc |
352 |
Q |
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| T |
56263527 |
accagagtagactagaagactctacgagtttggtc |
56263561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 56253889 - 56253779
Alignment:
| Q |
21 |
aaccaggatgatattgttctcccttaaaaagatcaactgctttgtactcatacttgagacctttgaggtttagagcaattcgaactcggaaggcacatga |
120 |
Q |
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| T |
56253889 |
aaccaggatgagattgttctcccttcaacagattaactgctttgtaatcata---------tttgaggttgagagcgatccgaactcggaaggaacatga |
56253799 |
T |
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| Q |
121 |
acttctccaatatgaataca |
140 |
Q |
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| T |
56253798 |
acttctccaatacgaataca |
56253779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 56265553 - 56265492
Alignment:
| Q |
21 |
aaccaggatgatattgttctcccttaaaaagatcaactgctttgtactcatacttgagacct |
82 |
Q |
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||||||||||| ||||||||||||| || |||| |||||||||||| ||||| ||||||||| |
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| T |
56265553 |
aaccaggatgagattgttctcccttcaacagattaactgctttgtaatcatatttgagacct |
56265492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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