View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_75 (Length: 366)
Name: NF11930_low_75
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 98 - 348
Target Start/End: Complemental strand, 46092558 - 46092311
Alignment:
| Q |
98 |
ttggttaactcttctagtcatcaactaactaaatttaattaagggtcatgtttcaactacatgcaaaaatgaacatttgtaaatcaaagctaatcacgtt |
197 |
Q |
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| T |
46092558 |
ttggttaactcttctggtcatcaactaactaaatttaattaagggtcatgtttcaactacatgcaaaaatgaacatttgtaaatcaaagctaatcacgtt |
46092459 |
T |
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| Q |
198 |
caaatgtgtagttgttgaacaaactgcaacatataatataatgcactccattaaccacatcatatagcatgagccctattctaccaccaacccaacttcc |
297 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46092458 |
caaatgtgtagttg---aacaaactgcaacatataatataatgcactccattaaccacatcatatagcatgagccctattctaccaccaacccaacttcc |
46092362 |
T |
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| Q |
298 |
caattgacttccaacaagataaccaccaaatcttccaagtatttgctcccc |
348 |
Q |
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| T |
46092361 |
caattgacttccaacaagataaccaccaaatcttccaagtatttgctcccc |
46092311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 46092678 - 46092596
Alignment:
| Q |
7 |
ttatacgtttattatctctcaattactccagggtatacctaagaatttacctaacatattttaacgggctcacgaatatatat |
89 |
Q |
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| T |
46092678 |
ttatacgtttgttatctctcaattacttcagggtatatctaagaatgtacctaacatattttaacgggctcacgaatatatat |
46092596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 46087316 - 46087208
Alignment:
| Q |
237 |
aatgcactccattaaccacatcatatagcatgagccctattctaccaccaacccaacttcccaattgacttccaacaagataaccaccaaatcttccaag |
336 |
Q |
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| T |
46087316 |
aatgcactccattagccacgtcatataccatgagtcctattctacctccaatccaacttcccaattgacttccaacaagata---accaaatcttccaag |
46087220 |
T |
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| Q |
337 |
tatttgctcccc |
348 |
Q |
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| T |
46087219 |
cctttgctcccc |
46087208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 37477009 - 37476928
Alignment:
| Q |
237 |
aatgcactccattaaccacatcatatagcatgagccctattctaccaccaacccaacttcccaattgacttccaacaagata |
318 |
Q |
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|||||||||| |||| ||||||||| | ||| | |||||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
37477009 |
aatgcactccgttaatcacatcataaatcattaatcctattctgccaccaacccaactgcccatgtgacttccaacaagata |
37476928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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