View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_76 (Length: 366)
Name: NF11930_low_76
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_76 |
 | |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 14455273 - 14455633
Alignment:
| Q |
1 |
cagctacgcggaatttcactttcaatattaggttgaaaaatttgagatataatcatcggtatacaaccagagccggagagcaacttcaatagaaaacatg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||| ||| ||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
14455273 |
cagctacgcggaatttcactttcaacattaggttgaaaaattggagctataattatctgtagacagccatagcattagagcaacttcaatagaaaacatg |
14455372 |
T |
|
| Q |
101 |
tctcaagtttggttgttaatattactaatttatggattattgtttttgaattatgttaatagcagtgctctagctattgagtgcttagcttctgatcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
|
|
| T |
14455373 |
tctcaagtttggttgttaatattactaatttatggattgttgtttctgaattatgttaatagcaatactctagctattgaatgcttagcttctgatcatg |
14455472 |
T |
|
| Q |
201 |
aagctcttgttgacttcaaaagtggccttgaggattctcacaaccgtctctcttcgcggaaaaacaccaattgttgtcaatggcgtggaatttattgcga |
300 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14455473 |
aggctcttgttgacttcaaaagtggtcttgaggattctcacaaccgtctctcttcgtggaaaaacaccaattgttgtcaatggcgtggaatttattgcga |
14455572 |
T |
|
| Q |
301 |
taacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgat |
361 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
14455573 |
taacatcacaggtgcggtcatttcaattgatctccataatccacatccaccatcatttgat |
14455633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 14496053 - 14495693
Alignment:
| Q |
1 |
cagctacgcggaatttcactttcaatattaggttgaaaaatttgagatataatcatcggtatacaaccagagccggagagcaacttcaatagaaaacatg |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
14496053 |
cagcaacgcggaatttcactttcaacattaggttgaaaaagttgagatataattatcagtatacagccagagcttgagagcaacttcaaaggaaaacatg |
14495954 |
T |
|
| Q |
101 |
tctcaagtttggttgttaatattactaatttatggattattgtttttgaattatgttaatagcagtgctctagctattgagtgcttagcttctgatcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14495953 |
tctcaagtttggttgttaatattactaatttatggcttgttgtttctgaattatgttaatagcaatgctctagctattgaatgcttagcttctgatcatg |
14495854 |
T |
|
| Q |
201 |
aagctcttgttgacttcaaaagtggccttgaggattctcacaaccgtctctcttcgcggaaaaacaccaattgttgtcaatggcgtggaatttattgcga |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
14495853 |
aagctcttgttgacttcaaaaatggccttgaggattctcacaaccgtctctcttcgtggagaaacaccaactgttgtcaatggcgtggaatttactgtga |
14495754 |
T |
|
| Q |
301 |
taacatcacaggtgcggtcatttcaatcgatctccataacccgcatccaccatcatttgat |
361 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14495753 |
taacaacacaggcgcggtcatttcaatcgatctccataacccgcatccaccgtcatttgat |
14495693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 76 - 348
Target Start/End: Original strand, 14459847 - 14460119
Alignment:
| Q |
76 |
gagagcaacttcaatagaaaacatgtctcaagtttggttgttaatattactaatttatggattattgtttttgaattatgttaatagcagtgctctagct |
175 |
Q |
| |
|
||||| ||| ||||| |||||||| |||||||||| ||||||||| ||| || ||||| | || || || | || | |||| ||| | ||||||||| |
|
|
| T |
14459847 |
gagagaaacatcaatggaaaacatttctcaagtttagttgttaatgttaatagtttatagcttgttacttgatatttcttttaacagccgagctctagct |
14459946 |
T |
|
| Q |
176 |
attgagtgcttagcttctgatcatgaagctcttgttgacttcaaaagtggccttgaggattctcacaaccgtctctcttcgcggaaaaacaccaattgtt |
275 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||| ||| ||||||||| |||| |
|
|
| T |
14459947 |
attgaatgcttagcttctgatcatgaagctcttgtagacttcaaaaatgggcttgaggattctcacaaccatctctcttcatggagaaacaccaactgtt |
14460046 |
T |
|
| Q |
276 |
gtcaatggcgtggaatttattgcgataacatcacaggtgcggtcatttcaatcgatctccataacccgcatcc |
348 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
14460047 |
gtcaatggcgtggaatttactgtgataacatcacaggcgcggtcgtttcaatcgatctccataacccacatcc |
14460119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 76 - 343
Target Start/End: Complemental strand, 14471581 - 14471314
Alignment:
| Q |
76 |
gagagcaacttcaatagaaaacatgtctcaagtttggttgttaatattactaatttatggattattgtttttgaattatgttaatagcagtgctctagct |
175 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||| | ||||||||||| || ||||||| || || || | || |||||| |||| | || ||||| |
|
|
| T |
14471581 |
gagagcaatttcaatgggaaacatgtctcaagttgagatgttaatattattagtttatggcttgttagttgcaatttctgttaacagcaatactgtagct |
14471482 |
T |
|
| Q |
176 |
attgagtgcttagcttctgatcatgaagctcttgttgacttcaaaagtggccttgaggattctcacaaccgtctctcttcgcggaaaaacaccaattgtt |
275 |
Q |
| |
|
||| | ||||| ||||||||||| ||||||||| | ||||| |||| ||| ||||||||||||||||||||||||| ||| ||| || || |||||||| |
|
|
| T |
14471481 |
attcaatgcttggcttctgatcaggaagctcttatagactttaaaaatgggattgaggattctcacaaccgtctctcgtcgtggagaagcaacaattgtt |
14471382 |
T |
|
| Q |
276 |
gtcaatggcgtggaatttattgcgataacatcacaggtgcggtcatttcaatcgatctccataacccg |
343 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
14471381 |
gtcaatggcatggaatatgctgcgataacatcacaggtgcggtcgttgcaattgatctccataacccg |
14471314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 9607 - 9698
Alignment:
| Q |
257 |
cggaaaaacaccaattgttgtcaatggcgtggaatttattgcgataacatcacaggtgcggtcatttcaatcgatctccataacccgcatcc |
348 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| | |||| | |||||||||||||||||||||| ||||| |
|
|
| T |
9607 |
cggaaaaacaacaattgttgtcaatggcacggaatatattgcgataacatcacaagcgcggacgtttcaatcgatctccataacccacatcc |
9698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University