View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_77 (Length: 362)
Name: NF11930_low_77
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 22 - 351
Target Start/End: Complemental strand, 1160348 - 1160016
Alignment:
| Q |
22 |
cacaaacatgaactatctgttactataagaaagggaggaggagga------catggaggttcaggtggccatggaagtggaatgggaggaagaggaattg |
115 |
Q |
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| T |
1160348 |
cacaaacatgaactatctgttactataagaaagggaggaggaggaggaggacatggaggttcaggtggccatggaagtggaatgggaggaagaggaattg |
1160249 |
T |
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| Q |
116 |
gtagaggaaggtcaggtggagcagctgcaggaattatcggcggtgcagtggctggtggagttgctggtggagtggttggtggtgcagtcgccaatcacgg |
215 |
Q |
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| T |
1160248 |
gtagaggaaggtcaggtggagcagctgcaggaattatcggcggtgcagtggctggtggagttgctggtggagtggttggtggtgcagtcgccaatcacgg |
1160149 |
T |
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| Q |
216 |
gcacaattatgaacacaaacaccttcatgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccacagctaat |
315 |
Q |
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| T |
1160148 |
gcacaattatggacacaaacaccttcatgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttcca---ctaat |
1160052 |
T |
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| Q |
316 |
taagtatcatgtttagttgcttctgtttaggcctat |
351 |
Q |
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| T |
1160051 |
taagtatcatgtttagttgcttctgtttaggcctat |
1160016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 1141737 - 1141671
Alignment:
| Q |
242 |
atgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccac |
308 |
Q |
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| T |
1141737 |
atgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgtttcacttccac |
1141671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 1172362 - 1172323
Alignment:
| Q |
20 |
atcacaaacatgaactatctgttactataagaaagggagg |
59 |
Q |
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| T |
1172362 |
atcacaaacatgaactatctcttactataagaaagggagg |
1172323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 1137083 - 1137017
Alignment:
| Q |
242 |
atgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccac |
308 |
Q |
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| T |
1137083 |
atgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccac |
1137017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 1141906 - 1141865
Alignment:
| Q |
22 |
cacaaacatgaactatctgttactataagaaagggaggagga |
63 |
Q |
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| T |
1141906 |
cacaaacatgaactatctgttaccataagaaaaggaggagga |
1141865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 1137306 - 1137266
Alignment:
| Q |
22 |
cacaaacatgaactatctgttactataagaaagggaggagg |
62 |
Q |
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| T |
1137306 |
cacaaacatgaactatctgttaccataagaaaaggaggagg |
1137266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 1165004 - 1164962
Alignment:
| Q |
20 |
atcacaaacatgaactatctgttactataagaaagggaggagg |
62 |
Q |
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| T |
1165004 |
atcacaaacatgaactatcccatactataagaaagggaggagg |
1164962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 1133733 - 1133696
Alignment:
| Q |
22 |
cacaaacatgaactatctgttactataagaaagggagg |
59 |
Q |
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| T |
1133733 |
cacaaacatgaactatctgttactgtaagaaaaggagg |
1133696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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