View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_78 (Length: 355)

Name: NF11930_low_78
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_78
NF11930_low_78
[»] chr7 (9 HSPs)
chr7 (1-337)||(44071740-44072076)
chr7 (1-226)||(47039427-47039652)
chr7 (1-226)||(47033143-47033368)
chr7 (221-337)||(47035561-47035677)
chr7 (1-161)||(47035276-47035436)
chr7 (221-337)||(47032874-47032990)
chr7 (221-337)||(47039216-47039332)
chr7 (47-226)||(37367515-37367694)
chr7 (73-189)||(2577855-2577971)
[»] chr2 (4 HSPs)
chr2 (73-226)||(34615539-34615692)
chr2 (73-226)||(34622721-34622874)
chr2 (223-335)||(34614907-34615019)
chr2 (223-337)||(34622392-34622506)
[»] chr4 (5 HSPs)
chr4 (162-284)||(26827848-26827970)
chr4 (73-178)||(420098-420203)
chr4 (162-299)||(23423535-23423672)
chr4 (162-299)||(23448035-23448172)
chr4 (162-299)||(23875281-23875418)
[»] chr8 (1 HSPs)
chr8 (133-286)||(35961628-35961781)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 44071740 - 44072076
Alignment:
Q  1 ccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44071740 ccctaaaactcttgagaagcagatccaatttcccctttcccttttccaactttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattag 44071839  T
Q  101 caatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttgtccctggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44071840 caatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttgtccctggc 44071939  T
Q  201 agcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44071940 agcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccg 44072039  T
Q  301 gccttgaggaatcttgcgattcttccaacggggaatt 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  44072040 gccttgaggaatcttgcgattcttccaacggggaatt 44072076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 47039652 - 47039427
Alignment:
Q  1 ccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattag 100  Q
    ||||| || |||||||| |||||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  47039652 ccctagaattcttgagacgcagatccaatttctccttttccctttccaaccttcttagggagcaaagtctgatgaatattgggcaaaacaccaccattag 47039553  T
Q  101 caatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttgtccctggc 200  Q
    ||||||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||||| |||||    
T  47039552 caatggtcacagttcccaaaagcttgctgagttcctcgtcgttcctcactgcaagctgaatgtgccttggtacaatacggttcttcttgttgtctctggc 47039453  T
Q  201 agcgttaccagccaattccaaaacct 226  Q
    |||||| |||||||||||||||||||    
T  47039452 agcgttcccagccaattccaaaacct 47039427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 47033368 - 47033143
Alignment:
Q  1 ccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattag 100  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  47033368 ccctaaaattcttgagaagcagatccaatttctcctttgccctttccaaccttcttaggaagcaaagtctgatgaatattgggcagaacaccaccattag 47033269  T
Q  101 caatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttgtccctggc 200  Q
    ||||||| |||| ||| |||||||||||||||||||| || || || |||||||||||||| |||||||| ||||| || ||||||||||||||||| ||    
T  47033268 caatggtcacagttcctaaaagcttgctgagttcttcatcgtttctaacagcaagctgaatgtgccttggtacaatacggttcttcttgttgtccctagc 47033169  T
Q  201 agcgttaccagccaattccaaaacct 226  Q
     || || |||||||||||||||||||    
T  47033168 ggcatttccagccaattccaaaacct 47033143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 221 - 337
Target Start/End: Original strand, 47035561 - 47035677
Alignment:
Q  221 aaacctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgat 320  Q
    ||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  47035561 aaacctcagcagcgagatactcaaggaccgcagagaggtataccggagcaccggcaccaacacgttcagcgtattttccggccttgaggaatcttgcgat 47035660  T
Q  321 tcttccaacggggaatt 337  Q
    |||||||||||||||||    
T  47035661 tcttccaacggggaatt 47035677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 47035276 - 47035436
Alignment:
Q  1 ccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattag 100  Q
    |||||||| |||||||||||||||||||||||  |||| || || |||  |||||| || ||||| ||||||||||| || |||||||||||||||||||    
T  47035276 ccctaaaattcttgagaagcagatccaatttcggcttttcccttcccagacttctttggcagcaaagtctgatgaatgttaggcaaaacaccaccattag 47035375  T
Q  101 caatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaat 161  Q
    |||||||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||    
T  47035376 caatggttacagctcccaaaagcttgcttagttcttcatcgttcctaacagcaagttgaat 47035436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 47032990 - 47032874
Alignment:
Q  221 aaacctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgat 320  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||    
T  47032990 aaacctcagcagcgagatactcaaggacggcggagagatagacaggagctccggcaccaacacgttcggcgtatttaccggccttgaggaatctggcgat 47032891  T
Q  321 tcttccaacggggaatt 337  Q
    |||||| ||||||||||    
T  47032890 tcttccgacggggaatt 47032874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 47039332 - 47039216
Alignment:
Q  221 aaacctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgat 320  Q
    ||||||||||||| |||||||| || ||||| || |||||||| ||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||    
T  47039332 aaacctcagcagcaagatactcgaggacggcggaaaggtagacaggagctccggcaccaacacgttcggcgtatttaccggccttgaggaatctggcgat 47039233  T
Q  321 tcttccaacggggaatt 337  Q
    |||||| ||||| ||||    
T  47039232 tcttccgacgggaaatt 47039216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 226
Target Start/End: Original strand, 37367515 - 37367694
Alignment:
Q  47 caaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcct 146  Q
    |||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||||| || |||  |||||| |  ||||| | |||||| || |||||    
T  37367515 caaccttctttggcaacaaagtctggtgaatgttaggcaaaacaccaccattagcaatagtcacatgtcccaacaatttgctcaattcttcatcgttcct 37367614  T
Q  147 cacagcaagctgaatatgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacct 226  Q
    |||||| || ||||  |||||||| ||||| |   |||||||||| ||||| ||||| ||||||||||||||||||||||    
T  37367615 cacagcgagttgaaggtgccttggtacaatccttgtcttcttgttatcccttgcagcattaccagccaattccaaaacct 37367694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 2577855 - 2577971
Alignment:
Q  73 tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa 172  Q
    ||||||||  ||| |||||| ||||| |||||||| ||| | || | ||||||||| | |||||| || ||||||||| | |  |||||||||||||| |    
T  2577855 tgaatattttgcataacaccgccattggcaatggtaacatcaccaagaagcttgctcaattcttcatcgttcctcacaaccaattgaatatgccttggca 2577954  T
Q  173 caattcgattcttcttg 189  Q
    |||||||| | ||||||    
T  2577955 caattcgaattttcttg 2577971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 34615692 - 34615539
Alignment:
Q  73 tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa 172  Q
    ||||||||||||| ||||||||||||||||||||| ||| | || | ||||||||| | |||||| || ||||||||||| |  ||||| || ||||| |    
T  34615692 tgaatattgggcataacaccaccattagcaatggtaacatcaccaagaagcttgctcaattcttcatcgttcctcacagccaattgaatgtgtcttggca 34615593  T
Q  173 caattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacct 226  Q
    ||||||   ||||||||||||| || ||||| || |||||||||||||||||||    
T  34615592 caattcttgtcttcttgttgtctcttgcagcatttccagccaattccaaaacct 34615539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 34622874 - 34622721
Alignment:
Q  73 tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa 172  Q
    |||||||| |||| |||||||||||||||||| || ||| | || | ||||||||| | |||||| || ||||||||||| |  ||||| || ||||| |    
T  34622874 tgaatatttggcataacaccaccattagcaatagtaacatcaccaagaagcttgctcaattcttcatcgttcctcacagccaattgaatgtgtcttggca 34622775  T
Q  173 caattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacct 226  Q
    ||||||   ||||||||||||| || ||||| || |||||||||||||||||||    
T  34622774 caattcttgtcttcttgttgtctcttgcagcatttccagccaattccaaaacct 34622721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 34615019 - 34614907
Alignment:
Q  223 acctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgattc 322  Q
    ||||||||||||||||| ||||| || ||||  ||||| || |||||||| || || ||||||||||||||||||||||| |||||||| |  ||||| |    
T  34615019 acctcagcagcgagatattcaagaacagcagctaggtaaacaggagcaccagcaccaacacgttcagcgtattttccggctttgaggaaacgagcgatac 34614920  T
Q  323 ttccaacggggaa 335  Q
      |||||||||||    
T  34614919 ggccaacggggaa 34614907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 34622506 - 34622392
Alignment:
Q  223 acctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgttcagcgtattttccggccttgaggaatcttgcgattc 322  Q
    |||||||| |||||||| ||||| || || | |||||| || |||||||| || || ||||||||||||||||||||||| |||||||| |  ||||| |    
T  34622506 acctcagcggcgagatattcaagaacagcggcgaggtaaacaggagcaccagcaccaacacgttcagcgtattttccggctttgaggaaacgagcgatac 34622407  T
Q  323 ttccaacggggaatt 337  Q
      |||||||||||||    
T  34622406 ggccaacggggaatt 34622392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 26827970 - 26827848
Alignment:
Q  162 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 261  Q
    |||||||||||  |||| |||||||||||| || |  |||||||| || |||||||| | ||||||||||||||| || ||||| || ||||  |||||     
T  26827970 atgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcagcgaggtattcaagaactgcagctaggtaa 26827871  T
Q  262 accggagcaccggcgccgacacg 284  Q
    ||||||||||||| |||||||||    
T  26827870 accggagcaccggtgccgacacg 26827848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 420098 - 420203
Alignment:
Q  73 tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa 172  Q
    ||||||||||||| |||||||||||||||||| || ||| | || | ||||||||| | |||||| |||||||||||||| |  ||||| || ||||| |    
T  420098 tgaatattgggcataacaccaccattagcaatagtaacatcaccaagaagcttgctcaattcttcatcattcctcacagccaattgaatgtgtcttggca 420197  T
Q  173 caattc 178  Q
    ||||||    
T  420198 caattc 420203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 23423535 - 23423672
Alignment:
Q  162 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 261  Q
    |||||||||||  |||| |||||||||||| || |  || || || |||||||| || | |||||||||||||||||| ||||| || || |  |||||     
T  23423535 atgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggtat 23423634  T
Q  262 accggagcaccggcgccgacacgttcagcgtattttcc 299  Q
    || |||||||| | ||| ||||| | ||||||| ||||    
T  23423635 actggagcacctgtgcctacacgctgagcgtatcttcc 23423672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 23448035 - 23448172
Alignment:
Q  162 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 261  Q
    |||||||||||  |||| |||||||||||| || |  || || || |||||||| || | |||||||||||||||||| ||||| || || |  |||||     
T  23448035 atgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggtat 23448134  T
Q  262 accggagcaccggcgccgacacgttcagcgtattttcc 299  Q
    || |||||||| | ||| ||||| | ||||||| ||||    
T  23448135 actggagcacctgtgcctacacgctgagcgtatcttcc 23448172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 23875418 - 23875281
Alignment:
Q  162 atgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcagcgagatactcaagtacggcagagaggtag 261  Q
    |||||||||||  |||| |||||||||||| || |  || || || |||||||| || | |||||||||||||||||| ||||| || || |  |||||     
T  23875418 atgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcagcgagatattcaagaactgctgctaggtat 23875319  T
Q  262 accggagcaccggcgccgacacgttcagcgtattttcc 299  Q
    || |||||||| | ||| ||||| | ||||||| ||||    
T  23875318 actggagcacctgtgcctacacgctgagcgtatcttcc 23875281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 35961781 - 35961628
Alignment:
Q  133 tcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttgtccctggcagcgttaccagccaattccaaaacctcagcag 232  Q
    ||||| |||||||||||||| | |   | ||||||||||| ||| | |||||||||||| || |  ||||| |||||||||||||| | ||| |||||||    
T  35961781 tcttcatcattcctcacagccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaacttcagcag 35961682  T
Q  233 cgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacgtt 286  Q
    | ||||| ||||| || || |  | ||| || |||||||||| |||||||||||    
T  35961681 caagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgtt 35961628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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