View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_8 (Length: 800)

Name: NF11930_low_8
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_8
NF11930_low_8
[»] chr7 (4 HSPs)
chr7 (412-786)||(25872968-25873345)
chr7 (1-159)||(25872484-25872649)
chr7 (225-320)||(25872715-25872810)
chr7 (49-118)||(25864041-25864109)
[»] scaffold0429 (1 HSPs)
scaffold0429 (616-681)||(12240-12304)
[»] chr4 (4 HSPs)
chr4 (616-681)||(52274308-52274372)
chr4 (265-316)||(26424942-26424993)
chr4 (273-320)||(53457824-53457871)
chr4 (271-316)||(19849588-19849633)
[»] chr3 (4 HSPs)
chr3 (616-681)||(16353292-16353357)
chr3 (616-681)||(11993927-11993991)
chr3 (272-320)||(42392886-42392934)
chr3 (271-320)||(35461560-35461609)
[»] chr6 (1 HSPs)
chr6 (53-109)||(17251619-17251674)
[»] scaffold0032 (1 HSPs)
scaffold0032 (272-320)||(56480-56528)
[»] chr8 (2 HSPs)
chr8 (273-320)||(70604-70651)
chr8 (273-316)||(4531067-4531110)
[»] chr5 (1 HSPs)
chr5 (273-320)||(35317778-35317825)
[»] chr2 (3 HSPs)
chr2 (273-320)||(11459715-11459762)
chr2 (273-320)||(34234530-34234577)
chr2 (273-320)||(42578180-42578227)
[»] chr1 (1 HSPs)
chr1 (269-316)||(32007070-32007117)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 412 - 786
Target Start/End: Original strand, 25872968 - 25873345
Alignment:
Q  412 aagaagaaatatcaaaggacattaagaacagggatctgtattttcgatccgaactgatcttactttgcaaaaccgaactgtgaacctttactaatcgaat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25872968 aagaagaaatatcaaaggacattaagaacagggatctgtattttcgatccgaactgatcttactttgcaaaaccgaactgtgaacctttactaatcgaat 25873067  T
Q  512 tggtttctatgcgatcagaacannnnnnnatgcgaatcaaactattgctattttcttgaactaaatttgaaggttttaa--ttgtctttctctcggtttt 609  Q
    ||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  25873068 tggtttctatgtgatcagaacaattttttatgcgaatcaaactattgctattttcttgaactaaatttgaaggttttaattttgtctttctctcagtttt 25873167  T
Q  610 tatttgggtgttgataaccttt-aagttttttctaagaataataaaatggtttcacaaatgagagcacaagcaatgcagtgtagtgcgacagaacaaaga 708  Q
    |||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25873168 tatttgggtgttgataacctttaaaaaaaattctaagaataataaaatggtttcacaaatgagagcacaagcaatgcagtgtagtgcgacagaacaaaga 25873267  T
Q  709 ctaagtttcaaagaaactatcgctagcactactcatattaaaattatcattattgtatttgtgtttctcgtgtctgtg 786  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25873268 ctaagtttcaaagaaactatcgctagcaccactcatattaaaattatcattattgtatttatgtttctcgtgtctgtg 25873345  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 25872484 - 25872649
Alignment:
Q  1 gatttgtcaaattccgcatcacagactaaatctcactcaatttttgttact------------ctaaatattaattaaattttataatttgaacataaac 88  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| |    
T  25872484 gatttgtcaaattccgcatcaccgactaaatctcactcaatttttgttactttaatttgaactctaaatattaattaaattttatgatttgaacataa-c 25872582  T
Q  89 aaagttaacttaaggtaaaaccgtgaaaaaagacatatacaatcaatcaaagtagtcaagacaaaagcgct 159  Q
    |||||||||| ||| ||||||||||||||| ||||||||    |||||||||||||||||| |||||||||    
T  25872583 aaagttaactaaagataaaaccgtgaaaaaggacatata----caatcaaagtagtcaagataaaagcgct 25872649  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 25872715 - 25872810
Alignment:
Q  225 tcattttactaatttgcattatttgttgacataaattaacaaattcgagtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||    
T  25872715 tcattttactaatttgcattatttgttgacataaattaacaaattcgagtctagaagtcctaactcaattggcaaatgccgatattacaaggtcgg 25872810  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 25864041 - 25864109
Alignment:
Q  49 actctaaatattaattaaattttataatttgaacataaacaaagttaacttaaggtaaaaccgtgaaaaa 118  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  25864041 actctaaatattaactaaattttaaaatttgaacat-aacaaagttgactaaaggtaaaaccgagaaaaa 25864109  T

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Target: scaffold0429 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 616 - 681
Target Start/End: Complemental strand, 12304 - 12240
Alignment:
Q  616 ggtgttgataacctttaagttttttctaagaataataaaatggtttcacaaatgagagcacaagca 681  Q
    |||||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  12304 ggtgttgataac-tttaagttttttctaagaataagaacatggtttcacaaatgagaacacaagca 12240  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 616 - 681
Target Start/End: Original strand, 52274308 - 52274372
Alignment:
Q  616 ggtgttgataacctttaagttttttctaagaataataaaatggtttcacaaatgagagcacaagca 681  Q
    |||||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  52274308 ggtgttgataac-tttaagttttttctaagaataagaacatggtttcacaaatgagaacacaagca 52274372  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 26424993 - 26424942
Alignment:
Q  265 aaattcgagtctagaaatcctagctaaattggcaaatgccgatattgcaagg 316  Q
    ||||| |||||||||| |||||||| || ||||||||||||| |||||||||    
T  26424993 aaattagagtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 26424942  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 53457824 - 53457871
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  53457824 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 53457871  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 19849633 - 19849588
Alignment:
Q  271 gagtctagaaatcctagctaaattggcaaatgccgatattgcaagg 316  Q
    |||||||||| |||||||| || ||||||||||||| |||||||||    
T  19849633 gagtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 19849588  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 681
Target Start/End: Complemental strand, 16353357 - 16353292
Alignment:
Q  616 ggtgttgataacctttaagttttttctaagaataataaaatggtttcacaaatgagagcacaagca 681  Q
    |||||||||||| |||||| ||||||||||||||| || || ||||||||||||||| ||||||||    
T  16353357 ggtgttgataacttttaagatttttctaagaataagaacatagtttcacaaatgagaacacaagca 16353292  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 616 - 681
Target Start/End: Complemental strand, 11993991 - 11993927
Alignment:
Q  616 ggtgttgataacctttaagttttttctaagaataataaaatggtttcacaaatgagagcacaagca 681  Q
    |||||||||||| |||| ||||||||||||||||| || |||||| ||||||||||| ||||||||    
T  11993991 ggtgttgataac-tttatgttttttctaagaataagaacatggttccacaaatgagaacacaagca 11993927  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 42392934 - 42392886
Alignment:
Q  272 agtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  42392934 agtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 42392886  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 35461609 - 35461560
Alignment:
Q  271 gagtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||||| | |||||| || ||||||||||||| |||||||||||||    
T  35461609 gagtctagaagttctagctcaactggcaaatgccgaaattgcaaggtcgg 35461560  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 17251674 - 17251619
Alignment:
Q  53 taaatattaattaaattttataatttgaacataaacaaagttaacttaaggtaaaac 109  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  17251674 taaatattaaataaattttataatttgaacat-aacaaagttaactaaaggtaaaac 17251619  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 56480 - 56528
Alignment:
Q  272 agtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||||||    
T  56480 agtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 56528  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 70651 - 70604
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  70651 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 70604  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 4531110 - 4531067
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaagg 316  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  4531110 gtctagaagtcctagctcaattggcaaatgccgaaattgcaagg 4531067  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 35317825 - 35317778
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  35317825 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 35317778  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 11459715 - 11459762
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  11459715 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 11459762  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 34234530 - 34234577
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  34234530 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 34234577  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 42578180 - 42578227
Alignment:
Q  273 gtctagaaatcctagctaaattggcaaatgccgatattgcaaggtcgg 320  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||    
T  42578180 gtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcgg 42578227  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 32007070 - 32007117
Alignment:
Q  269 tcgagtctagaaatcctagctaaattggcaaatgccgatattgcaagg 316  Q
    |||||||||||| |||||||| || ||||||||||||| |||||||||    
T  32007070 tcgagtctagaagtcctagctcaactggcaaatgccgaaattgcaagg 32007117  T

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