View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_82 (Length: 336)
Name: NF11930_low_82
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 125 - 322
Target Start/End: Complemental strand, 27642463 - 27642254
Alignment:
| Q |
125 |
taatatgtttgaatcttgttgacctccggc-gataatttctttatcatatcaatacaattttttatcttttctagggtgaaaaggaaaatatgtatgtgg |
223 |
Q |
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| T |
27642463 |
taatatgtttgaatgttgttgacctccggctgataatttctttattatatcaatacaattttttatcttttctagggtgaaaaggaaaatatgtatgtgg |
27642364 |
T |
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| Q |
224 |
gttccaccatgttct----------tattaaataaacgaggaaacatataattttgt-nnnnnnnnnttattatatataatattttttcacctcataaac |
312 |
Q |
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| T |
27642363 |
gttccaccatgttctctcatgttcgtattaaataaacgaggaaacatataattttgtaaaaaaaaaatgattatatataatattttataacctcagaaac |
27642264 |
T |
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| Q |
313 |
aacaaaactt |
322 |
Q |
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| T |
27642263 |
aacaaaactt |
27642254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 27643050 - 27642959
Alignment:
| Q |
15 |
atgaatctcaaacggtaaagatgtgaaagtgttttgaaattatcgtgatattgagtctatttcaatatttttcttcaatactatcaaagtat |
106 |
Q |
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| T |
27643050 |
atgaatctcaaacagtaaagatgtgaaagtgttttgaaattatcgtgatattgagtctatttcaatatttttcttcaatactatcaaagtat |
27642959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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