View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11930_low_83 (Length: 335)

Name: NF11930_low_83
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11930_low_83
NF11930_low_83
[»] chr1 (4 HSPs)
chr1 (1-319)||(28660218-28660537)
chr1 (74-319)||(23987950-23988196)
chr1 (84-288)||(13443490-13443693)
chr1 (1-59)||(23987856-23987914)
[»] chr6 (6 HSPs)
chr6 (71-296)||(8048457-8048683)
chr6 (68-324)||(18717681-18717937)
chr6 (125-245)||(14238864-14238984)
chr6 (81-159)||(24442697-24442775)
chr6 (1-68)||(24442809-24442876)
chr6 (10-51)||(11190763-11190804)
[»] chr8 (8 HSPs)
chr8 (69-317)||(5646540-5646788)
chr8 (71-323)||(18180177-18180429)
chr8 (81-245)||(23570853-23571017)
chr8 (81-276)||(42890755-42890951)
chr8 (81-288)||(42891194-42891402)
chr8 (71-289)||(26375248-26375467)
chr8 (1-64)||(42890654-42890717)
chr8 (1-59)||(18180462-18180520)
[»] chr7 (5 HSPs)
chr7 (71-319)||(24840535-24840783)
chr7 (125-323)||(1368326-1368522)
chr7 (87-154)||(1786200-1786267)
chr7 (1-68)||(4300718-4300785)
chr7 (11-59)||(1366923-1366971)
[»] scaffold0240 (1 HSPs)
scaffold0240 (71-325)||(16385-16639)
[»] chr2 (6 HSPs)
chr2 (71-276)||(33051917-33052123)
chr2 (81-245)||(31634464-31634628)
chr2 (81-245)||(27955723-27955887)
chr2 (92-202)||(33054024-33054134)
chr2 (1-64)||(27955925-27955988)
chr2 (1-59)||(33054189-33054247)
[»] chr5 (1 HSPs)
chr5 (83-305)||(19496787-19497010)
[»] chr4 (7 HSPs)
chr4 (164-288)||(22923526-22923651)
chr4 (164-288)||(22928179-22928304)
chr4 (164-288)||(22984458-22984583)
chr4 (164-288)||(22998046-22998171)
chr4 (264-323)||(16409916-16409975)
chr4 (1-59)||(22691484-22691542)
chr4 (209-288)||(22768292-22768372)
[»] chr3 (1 HSPs)
chr3 (109-288)||(43306301-43306481)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 28660537 - 28660218
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataaaatccatacaaaacatacctgtgaatctgatatggaatact 100  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||    
T  28660537 aacaaaaacaatccgaacaggggaggaggatcaattccggttattagggttcacaaaaaaatccatatagaacatacctgtgaatctgatatggaatact 28660438  T
Q  101 ttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattttattgcaacaaaaattactc 200  Q
     ||||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  28660437 atgagcgtagatattacaaaaagctgaaggataattactacaagtttaaaatctctgatttgatatatcgttgtccattttgttgcaacaaaaattactc 28660338  T
Q  201 cttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgctaaacattatgtttttataatgtatattgaa 299  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  28660337 cttgaccaaccttttgaaacatgctttcagattggcaggtaactcacgtaaaacggttaaagatattgctaaacattatgttttgataatgtatattgaa 28660238  T
Q  300 aggtatcttaatgttaaagt 319  Q
    ||||||||||||||||||||    
T  28660237 aggtatcttaatgttaaagt 28660218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 319
Target Start/End: Original strand, 23987950 - 23988196
Alignment:
Q  74 atacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttg 173  Q
    |||||| |||||||||| ||||||||| |||| ||| ||||||||| ||  ||||||||||||||||||||||||||||||   ||| ||||||||||||    
T  23987950 atacctatgaatctgatctggaatactatgagtgtatatattacaacaagttgaaggatgattactacaagtttaaaatctctaattcgatatatcgttg 23988049  T
Q  174 tccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aatattgctaaa 272  Q
    | | |||| || ||||||| ||||||||||| || ||||||||| ||||||||||||| ||| |||||||||  || | ||| ||||  |||||||||||    
T  23988050 tacgttttgttacaacaaagattactccttgaccgaccttttgagacatgcttccagaatggcaggtaactcgtgtaagacgattaatgatattgctaaa 23988149  T
Q  273 cattatgtttttataatgtatattgaaaggtatcttaatgttaaagt 319  Q
    || | ||||||||||| |||||||  ||||||| |||||||||||||    
T  23988150 cactttgtttttataacgtatattctaaggtattttaatgttaaagt 23988196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 288
Target Start/End: Complemental strand, 13443693 - 13443490
Alignment:
Q  84 atctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattttat 183  Q
    ||||||| ||||||| | |||||||||||||||||| |   ||| ||||||||||||||| ||| ||||||  |||| |||||||||||||||||||| |    
T  13443693 atctgatttggaatattatgagcgtagatattacaacaggttgacggatgattactacaaatttgaaatctctgattcgatatatcgttgtccattttgt 13443594  T
Q  184 tgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgctaaacattatgttt 282  Q
    | ||||||| |||||||||  ||| ||||||||| |||||||||| || |   ||||||||||||| |  || ||||| ||||||||| ||||| |||||    
T  13443593 tacaacaaagattactcct--tccgaccttttgagacatgcttccggaatatcaggtaactcacgtaagccgattaaagatattgctagacattctgttt 13443496  T
Q  283 ttataa 288  Q
    | ||||    
T  13443495 tgataa 13443490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23987856 - 23987914
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataa 59  Q
    |||| ||||||||||||||| | |||| ||||||||| | |||||||||||| ||||||    
T  23987856 aacataaacaatccgaacagagaaggatgaccaattctggttattagggttcttaataa 23987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 296
Target Start/End: Complemental strand, 8048683 - 8048457
Alignment:
Q  71 aacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcg 170  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||  |||||||||||||||||||||||||| | | |||||||||||    
T  8048683 aacatacctgtgaatctgatttggaatactatgagcgtagatattacaacaaattgccggatgattactacaagtttaaaatctccaaattgatatatcg 8048584  T
Q  171 ttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgct 269  Q
    |||| | |||| || ||||||| ||||||||||| || ||||||||| ||||||||||||| | | ||||||||||||| | ||  ||||| ||||||||    
T  8048583 ttgttcgttttgttacaacaaagattactccttgaccgaccttttgagacatgcttccagaatagcaggtaactcacgtaacacaattaaagatattgct 8048484  T
Q  270 aaacattatgtttttataatgtatatt 296  Q
    ||||| | |||||| |||| |||||||    
T  8048483 aaacactctgttttgataacgtatatt 8048457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 324
Target Start/End: Complemental strand, 18717937 - 18717681
Alignment:
Q  68 caaaacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatata 167  Q
    |||||||||||| || ||||||| ||||||||| ||||| |||||| |||| | |  |||||||||||| |||||| ||| |||||| |||||  |||||    
T  18717937 caaaacatacctatgtatctgatttggaatactatgagcatagatagtacacatagttgaaggatgatttctacaaatttgaaatctccgattccatata 18717838  T
Q  168 tcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atatt 266  Q
    ||||||||| |||| || ||||||| ||||||| ||| ||  |||||| | || |||||||||| | |||| ||||||||||   || |||||| |||||    
T  18717837 tcgttgtccgttttgttacaacaaagattactctttgacc-gcctttttagacgtgcttccagaattgtagataactcacgtaggacagttaaagatatt 18717739  T
Q  267 gctaaacattatgtttttataatgtatattgaaaggtatcttaatgttaaagttgatg 324  Q
    |||| ||| | |||||| |||| |||||||  |||||||| ||||||||| |||||||    
T  18717738 gctagacaatctgttttgataacgtatattctaaggtatcataatgttaatgttgatg 18717681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 14238864 - 14238984
Alignment:
Q  125 tgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgc 224  Q
    ||||||||||||||||| ||||||||||||  |||| ||||||||||||||| |||  |  ||||||| ||||||||||| || ||||||||| ||||||    
T  14238864 tgaaggatgattactactagtttaaaatctctgattcgatatatcgttgtccgtttcttgacaacaaagattactccttgaccgaccttttgagacatgc 14238963  T
Q  225 ttccagattggtaggtaactc 245  Q
    ||| ||| ||| |||||||||    
T  14238964 ttctagaatggcaggtaactc 14238984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 24442775 - 24442697
Alignment:
Q  81 tgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgat 159  Q
    |||||||||| ||||||||| |||||||||||||||||| |   |||||||||||||||||||||||||||||| ||||    
T  24442775 tgaatctgatttggaatactatgagcgtagatattacaacatgttgaaggatgattactacaagtttaaaatctccgat 24442697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24442876 - 24442809
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataaaatccatac 68  Q
    ||||||||||||| ||| |||||||||||| |||||||| |||||||||||||| |||| | ||||||    
T  24442876 aacaaaaacaatctgaataggggaggaggatcaattccggttattagggttcattataacaaccatac 24442809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 11190763 - 11190804
Alignment:
Q  10 aatccgaacaggggaggaggaccaattccgattattagggtt 51  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  11190763 aatccgaacaggggaggacaaccaattccaattattagggtt 11190804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 69 - 317
Target Start/End: Complemental strand, 5646788 - 5646540
Alignment:
Q  69 aaaacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatat 168  Q
    ||||||||||||| |||||||| |||| |||| |||  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||    
T  5646788 aaaacatacctgtaaatctgatttggagtactatgaatgtagatattacaaaaaattgaaggatgattactacaagtttaaaatctccgattcgatacat 5646689  T
Q  169 cgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattg 267  Q
    |||||||| |||| || ||||||| ||||||| ||| || ||||||||| | ||| || || | ||| ||||||||| ||| | |||| |||| ||||||    
T  5646688 cgttgtccgttttgttacaacaaagattactctttgaccgaccttttgaga-atgatttcataatggcaggtaactcgcgtaagacggataaagatattg 5646590  T
Q  268 ctaaacattatgtttttataatgtatattgaaaggtatcttaatgttaaa 317  Q
    | ||||| | |||||| |||||||||||| ||||||||||||||||||||    
T  5646589 ccaaacactctgttttgataatgtatattcaaaggtatcttaatgttaaa 5646540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 323
Target Start/End: Complemental strand, 18180429 - 18180177
Alignment:
Q  71 aacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcg 170  Q
    |||||||| ||||||||||| ||||||||| ||||| |||||||||||| ||  ||||||||||||||||| |||||||||||| |||||||| ||||||    
T  18180429 aacatacc-gtgaatctgatttggaatactgtgagcatagatattacaacaagttgaaggatgattactacgagtttaaaatctccgatttgaaatatcg 18180331  T
Q  171 ttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aatattgct 269  Q
    |||||| |||| || ||||||| ||||||||||  |  ||||||||| ||||||||||||| ||| ||||||||| ||| | ||| ||||  |||||||     
T  18180330 ttgtccgttttgttacaacaaatattactcctttactgaccttttgagacatgcttccagaatggcaggtaactcgcgtaagacgattaaggatattgcc 18180231  T
Q  270 aaacattatgtttttataatgtatattgaaaggtatcttaatgttaaagttgat 323  Q
    ||||||| |||||| ||||  |||||  || |||||||||||||||| ||||||    
T  18180230 aaacattctgttttgataacttatatgcaatggtatcttaatgttaatgttgat 18180177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 23570853 - 23571017
Alignment:
Q  81 tgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattt 180  Q
    |||||||||| ||||||||| ||||||||||||||||| ||   ||||||||||||||||||| ||| |||||| |||||  |||||||||||||| |||    
T  23570853 tgaatctgatttggaatactatgagcgtagatattacacaaggttgaaggatgattactacaaatttgaaatctccgattcaatatatcgttgtccgttt 23570952  T
Q  181 tattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactc 245  Q
    | || || |||| |||||||||||||| ||||||||| ||||||||||||| | ||| |||||||    
T  23570953 tgttacagcaaagattactccttgtccgaccttttgagacatgcttccagaattgtacgtaactc 23571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 81 - 276
Target Start/End: Original strand, 42890755 - 42890951
Alignment:
Q  81 tgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattt 180  Q
    |||||||||| ||||||| | |||||||||||||||||| ||  ||| ||||||||||||| || || |||||| ||||| | ||||||||||||| |||    
T  42890755 tgaatctgatttggaatattatgagcgtagatattacaacaagttgacggatgattactacgagattgaaatctccgattcggtatatcgttgtccgttt 42890854  T
Q  181 tattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgctaaacatt 276  Q
    | || ||||||| |||||||||||||| ||||||||| ||||||||||||| | |  | |||||||||| | ||||||||| ||||||||| |||||    
T  42890855 tgttacaacaaagattactccttgtccgaccttttgagacatgcttccagaatagctgataactcacgtaagacggttaaagatattgctagacatt 42890951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 288
Target Start/End: Complemental strand, 42891402 - 42891194
Alignment:
Q  81 tgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattt 180  Q
    |||||||||| ||||||| | |||| ||||||||||||| ||  ||| ||||||||||||| || || |||||| ||||| | ||||||||||||| |||    
T  42891402 tgaatctgatttggaatattatgagtgtagatattacaacaagttgacggatgattactacgagattgaaatctccgattcggtatatcgttgtccgttt 42891303  T
Q  181 tattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgctaaacattatg 279  Q
    | || ||||||| ||||||||| |||| ||||||||| ||||||||||||| | |  | |||||||||| | | ||||||| ||||||||| ||||| ||    
T  42891302 tgttacaacaaagattactcctagtccgaccttttgagacatgcttccagaatagctgataactcacgtaagaaggttaaagatattgctagacattctg 42891203  T
Q  280 tttttataa 288  Q
    |||| ||||    
T  42891202 ttttgataa 42891194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 289
Target Start/End: Original strand, 26375248 - 26375467
Alignment:
Q  71 aacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcg 170  Q
    |||||| | ||||||||||| || |||||| |||||||||||||||||| ||  ||||||||||||||||  ||||||||||||  ||||  | |||||     
T  26375248 aacatatccgtgaatctgatttgtaatactatgagcgtagatattacaacaagttgaaggatgattactatgagtttaaaatctctgattcaaaatatca 26375347  T
Q  171 ttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aatattgct 269  Q
    |||||| |||| || || |||| ||||||||||| |  ||||||||| ||||||||  ||| ||| ||||||||| ||| | ||| ||||  |||||| |    
T  26375348 ttgtccgttttgttacaccaaagattactccttgactgaccttttgagacatgcttatagaatggcaggtaactcgcgtaagacgattaaggatattgtt 26375447  T
Q  270 aaacattatgtttttataat 289  Q
    ||||||| |||||| |||||    
T  26375448 aaacattctgttttgataat 26375467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42890654 - 42890717
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataaaatcc 64  Q
    |||| ||||||||||||||| ||||||| |||||||||| |||||||||||  |||||| ||||    
T  42890654 aacagaaacaatccgaacagaggaggagaaccaattccggttattagggtttgtaataacatcc 42890717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18180520 - 18180462
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataa 59  Q
    |||| ||| |||||||||||| |||||| ||||||| || |||||||||||| ||||||    
T  18180520 aacagaaaaaatccgaacaggagaggagaaccaatttcggttattagggttcgtaataa 18180462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 24840535 - 24840783
Alignment:
Q  71 aacatacctgtgaatctgatatggaata--ctttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatat 168  Q
    |||||||| ||||||||||| | |||||  || |||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||| ||| |      
T  24840535 aacatacccgtgaatctgatttagaatatactatgagcgtaaatattacaaaaaactgaaggatgattactacaagtttaaaatctctaattcgatgt-- 24840632  T
Q  169 cgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattg 267  Q
    |||||||| |||| || |||||||| |||||||||| || ||||||||| ||||||||| ||| ||||||||||||| | | ||||||||||| ||||||    
T  24840633 cgttgtccgtttttttacaacaaaagttactccttgaccgaccttttgagacatgcttcaagaatggtaggtaactcgcataaaacggttaaagatattg 24840732  T
Q  268 ctaaacattatgtttttataatgtatattgaaaggtatcttaatgttaaagt 319  Q
     | || |||||||||| ||||| |||||| ||||||||||||||||||||||    
T  24840733 -ttaatattatgttttaataatatatattaaaaggtatcttaatgttaaagt 24840783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 323
Target Start/End: Original strand, 1368326 - 1368522
Alignment:
Q  125 tgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgc 224  Q
    ||||||||||| | ||| |||||||||||| ||||| ||||||||||||||| |||| || ||||||  ||   |||||| || ||||||||| ||||||    
T  1368326 tgaaggatgatcattacgagtttaaaatctccgattcgatatatcgttgtccgttttgttacaacaaggat---tccttgaccgaccttttgagacatgc 1368422  T
Q  225 ttccagattggtaggtaactcacgtgaaacggttaaa-atattgctaaacattatgtttttataatgtatattgaaaggtatcttaatgttaaagttgat 323  Q
    ||  ||| | | ||||||||  ||| | ||||||||| ||||||| |||||||  ||||| ||||  || |||  |||||||| ||||||||| ||||||    
T  1368423 ttttagaattgcaggtaacttgcgtaagacggttaaagatattgccaaacattcagttttgataacatacattctaaggtatcataatgttaatgttgat 1368522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 1786200 - 1786267
Alignment:
Q  87 tgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatct 154  Q
    |||| ||||||||| |||||| | ||||||||| ||||||||||||||||||||||| ||||||||||    
T  1786200 tgatttggaatactatgagcgcaaatattacaataaactgaaggatgattactacaattttaaaatct 1786267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4300718 - 4300785
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataaaatccatac 68  Q
    |||| ||||||||||||||| |||| || ||||||||||||||||||||||  |||||| | ||||||    
T  4300718 aacagaaacaatccgaacagaggagaagaaccaattccgattattagggtttgtaataacaaccatac 4300785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 1366923 - 1366971
Alignment:
Q  11 atccgaacaggggaggaggaccaattccgattattagggttcataataa 59  Q
    |||||||||| ||||||||| |||||||| |||||||||||| ||||||    
T  1366923 atccgaacagaggaggaggatcaattccggttattagggttcgtaataa 1366971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 71 - 325
Target Start/End: Original strand, 16385 - 16639
Alignment:
Q  71 aacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcg 170  Q
    |||||||| ||||||||||| | | | | | ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  16385 aacatacccgtgaatctgatttagtagagtatgagcatagacattacaaaacactgaaggatgattactacaagtttaaaatcttagattcgatatattg 16484  T
Q  171 ttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgct 269  Q
    ||||||||||| || ||||||| ||||||| ||| || ||||||||| | ||| || || | ||| ||||||||| ||| | |||| |||| |||||||     
T  16485 ttgtccattttgttacaacaaagattactctttgaccgaccttttgaga-atgatttcataatggcaggtaactcgcgtaagacggataaagatattgcc 16583  T
Q  270 aaacattatgtttttataatgtatattgaaaggtatcttaatgttaaagttgatga 325  Q
    ||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  16584 aaacactctgttttgataatgtatattcaaaggtatcttaatgttaaagttgatga 16639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 33051917 - 33052123
Alignment:
Q  71 aacatacctgtgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcg 170  Q
    |||||| | ||| ||||||| ||||||||| |||||||||||||||||| ||  |||| | |||||||||||||||||||||||  |||| |||||||||    
T  33051917 aacatatccgtggatctgatttggaatactatgagcgtagatattacaacaagttgaatgttgattactacaagtttaaaatctctgattcgatatatcg 33052016  T
Q  171 ttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgct 269  Q
    || |||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||| ||| ||||||||| ||| | ||| ||||| |||||| |    
T  33052017 ttatccattttgttgcaacaaagattactccttgaccaaccttttgagacatgcttccagaatggcaggtaactcgcgtaagacgattaaagatattgtt 33052116  T
Q  270 aaacatt 276  Q
    |||||||    
T  33052117 aaacatt 33052123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 31634464 - 31634628
Alignment:
Q  81 tgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattt 180  Q
    |||||| ||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||  |||| |||||||||||||||||||    
T  31634464 tgaatcagatttggaatactatgagcgtagatattacacaaaattgaaggatgattactacaaatttgaaatctctgattcgatatatcgttgtccattt 31634563  T
Q  181 tattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactc 245  Q
    | || ||||||| |||||||||||||| ||||||||| ||||||||||||| | | |||||||||    
T  31634564 tgttacaacaaagattactccttgtccgaccttttgagacatgcttccagaattgcaggtaactc 31634628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 27955887 - 27955723
Alignment:
Q  81 tgaatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattt 180  Q
    |||||||||| ||||||||| ||||||||||||||||| ||   ||||||||||||| ||||| ||| |||||| ||||| ||||||||||||||| |||    
T  27955887 tgaatctgatttggaatactatgagcgtagatattacacaaggttgaaggatgattattacaaatttgaaatctccgattcgatatatcgttgtccgttt 27955788  T
Q  181 tattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactc 245  Q
    | || ||||||| ||||||||||| ||  |||||||| |||||||| |||| | | |||||||||    
T  27955787 tgttacaacaaagattactccttgaccggccttttgagacatgctttcagaattgcaggtaactc 27955723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 33054134 - 33054024
Alignment:
Q  92 tggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattttattgcaacaa 191  Q
    ||||||||| |||||||| ||||||||| ||  ||||||||||||||||| ||||||||||||  |||| ||||||||||||||| ||||  |  |||||    
T  33054134 tggaatactatgagcgtaaatattacaacaagttgaaggatgattactacgagtttaaaatctctgattcgatatatcgttgtccgttttgctataacaa 33054035  T
Q  192 aaattactcct 202  Q
    | |||||||||    
T  33054034 agattactcct 33054024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27955988 - 27955925
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataaaatcc 64  Q
    |||| ||||||||||||||| ||||||| |||||||||  |||||||||||  |||||| ||||    
T  27955988 aacagaaacaatccgaacagaggaggagaaccaattccagttattagggtttgtaataacatcc 27955925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33054247 - 33054189
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataa 59  Q
    |||| |||||| |||||||| |||||| ||||||||| | |||||||||||| ||||||    
T  33054247 aacagaaacaacccgaacagaggaggatgaccaattctggttattagggttcgtaataa 33054189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 305
Target Start/End: Complemental strand, 19497010 - 19496787
Alignment:
Q  83 aatctgatatggaatactttgagcgtagatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccatttta 182  Q
    |||||||| ||||||||| ||| ||||| ||||| || ||| |||||||||||||| || |||||||||||| ||||| || |||||| ||||  ||||     
T  19497010 aatctgatttggaatactatgaacgtaggtattaaaataaattgaaggatgattacaacgagtttaaaatctacgattcgaaatatcgctgtctgttttg 19496911  T
Q  183 ttgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aatattgctaaacattatgtt 281  Q
    || ||||||| |||||| |||| || ||||| ||| ||||||||||||| | | |||||||||| || | ||| ||||  ||||||||| ||||| ||||    
T  19496910 ttacaacaaagattacttcttgaccgaccttctgagacatgcttccagaatagcaggtaactcatgtaagacgattaaggatattgctatacattttgtt 19496811  T
Q  282 tttataatgtatattgaaaggtat 305  Q
    || ||||  ||||||  |||||||    
T  19496810 ttgataacatatattctaaggtat 19496787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 22923526 - 22923651
Alignment:
Q  164 tatatcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aa 262  Q
    ||||||||||||| |||| |||||||||| |||||| |||| || || |||||| ||||||||||||| ||||||||||||| ||| | ||| ||||  |    
T  22923526 tatatcgttgtccgttttgttgcaacaaagattacttcttgaccgacattttgagacatgcttccagaatggtaggtaactcgcgtaagacgattaagca 22923625  T
Q  263 tattgctaaacattatgtttttataa 288  Q
    |||||||||||||| |||||| ||||    
T  22923626 tattgctaaacattttgttttaataa 22923651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 22928179 - 22928304
Alignment:
Q  164 tatatcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aa 262  Q
    ||||||||||||| |||| |||||||||| |||||| |||| || || |||||| ||||||||||||| ||||||||||||| ||| | ||| ||||  |    
T  22928179 tatatcgttgtccgttttgttgcaacaaagattacttcttgaccgacattttgagacatgcttccagaatggtaggtaactcgcgtaagacgattaagca 22928278  T
Q  263 tattgctaaacattatgtttttataa 288  Q
    |||||||||||||| |||||| ||||    
T  22928279 tattgctaaacattttgttttaataa 22928304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 22984458 - 22984583
Alignment:
Q  164 tatatcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aa 262  Q
    ||||||||||||| |||| |||||||||| |||||| |||| || || |||||| ||||||||||||| ||||||||||||| ||| | ||| ||||  |    
T  22984458 tatatcgttgtccgttttgttgcaacaaagattacttcttgaccgacattttgagacatgcttccagaatggtaggtaactcgcgtaagacgattaagca 22984557  T
Q  263 tattgctaaacattatgtttttataa 288  Q
    |||||||||||||| |||||| ||||    
T  22984558 tattgctaaacattttgttttaataa 22984583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 22998046 - 22998171
Alignment:
Q  164 tatatcgttgtccattttattgcaacaaaaattactccttgtccaaccttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaa-aa 262  Q
    ||||||||||||| |||| |||||||||| |||||| |||| || || |||||| ||||||||||||| ||||||||||||| ||| | ||| ||||  |    
T  22998046 tatatcgttgtccgttttgttgcaacaaagattacttcttgaccgacattttgagacatgcttccagaatggtaggtaactcgcgtaagacgattaagca 22998145  T
Q  263 tattgctaaacattatgtttttataa 288  Q
    |||||||||||||| |||||| ||||    
T  22998146 tattgctaaacattttgttttaataa 22998171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 16409975 - 16409916
Alignment:
Q  264 attgctaaacattatgtttttataatgtatattgaaaggtatcttaatgttaaagttgat 323  Q
    ||||||||||||| || ||| | ||||||||||||| |||||||||||||||||||||||    
T  16409975 attgctaaacattctgctttgaaaatgtatattgaagggtatcttaatgttaaagttgat 16409916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22691484 - 22691542
Alignment:
Q  1 aacaaaaacaatccgaacaggggaggaggaccaattccgattattagggttcataataa 59  Q
    ||||||||||||| ||||||| |||||| | |||||||| |||||||||||| ||||||    
T  22691484 aacaaaaacaatctgaacaggagaggagaatcaattccggttattagggttcgtaataa 22691542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 22768372 - 22768292
Alignment:
Q  209 accttttgaaacatgcttccagattggtaggtaactcacgtgaaacggttaaa-atattgctaaacattatgtttttataa 288  Q
    ||||||||| || ||||| |||| |||||| |||||| ||| | ||| ||||| ||||||||||||||| |||||| ||||    
T  22768372 accttttgagacttgctttcagaatggtagataactcgcgtaagacgattaaacatattgctaaacattctgttttgataa 22768292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 288
Target Start/End: Complemental strand, 43306481 - 43306301
Alignment:
Q  109 agatattacaaaaaactgaaggatgattactacaagtttaaaatcttcgatttgatatatcgttgtccattttattgcaacaaaaattactccttgtcca 208  Q
    ||||||||||| ||  ||| ||||||||||||| || || ||||||  |||| | ||||||||||||| |||| || ||||||| |||||||||||||      
T  43306481 agatattacaacaagttgacggatgattactacgagattgaaatctctgattcggtatatcgttgtccgttttgttacaacaaagattactccttgtctg 43306382  T
Q  209 accttttgaaacatgcttccagattggtaggtaactcacgtgaaacggtt-aaaatattgctaaacattatgtttttataa 288  Q
    |||| |||| ||||||||| ||| | |  | |||||||||| | |||||| |||||||||||| ||||| |||||| ||||    
T  43306381 acctattgagacatgcttctagaatagctgataactcacgtaagacggttaaaaatattgctagacattctgttttgataa 43306301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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