View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_85 (Length: 324)
Name: NF11930_low_85
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 13153463 - 13153761
Alignment:
| Q |
17 |
agcacaaagtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttatataggagaagagattcattgtgcagt |
116 |
Q |
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| T |
13153463 |
agcacaaagtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttatataggagaagagattcattgtgcagt |
13153562 |
T |
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| Q |
117 |
gatcaataatatctcatgggcatgggccattagcaattagcatactaatataaaggtcaaaatatgagactttatgtttatcaatatgattcaatgaatt |
216 |
Q |
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| T |
13153563 |
gatcaataatatctcatgggcatgggccattagtaattagcatactaatataaaggtcaaaatatgagactttatgtttatcaatatgattcaatgaatt |
13153662 |
T |
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| Q |
217 |
ctatggctatcactttcctctttagaaatttcttgtcctttttaattaaaattcatgatttcattagactagtcgttatgggtagatatgaatctctatt |
316 |
Q |
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| T |
13153663 |
ctatggctatcactttcctctttagaaatttcttgtcctttttaatt--aattcatgatttcattagactagtcgttatgggtagatatgaatctctatt |
13153760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 13150689 - 13150786
Alignment:
| Q |
193 |
tttatcaatatgattcaatgaattctatggctatcactttcctctttagaaatttcttgtcctttttaattaaaattcatgatttcattagactagtcgt |
292 |
Q |
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| T |
13150689 |
tttatcaattggattcaatgaattctatggctatcactttcatctataaaaatttcttgtcctttataatt--aattcatactttcattagactagtcgt |
13150786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 13147859 - 13147925
Alignment:
| Q |
27 |
agtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttatatag |
94 |
Q |
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| T |
13147859 |
agtgtaataaag-cttgagtattaagttgagtcctaaacttatttttgcaagtcacatatttatatag |
13147925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 13147995 - 13148073
Alignment:
| Q |
224 |
tatcactttcctctttagaaatttcttgtcctttttaattaaaattcatgatttcattagactagtcgttatgggtagata |
304 |
Q |
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| T |
13147995 |
tatcactttcctcaatagaaactttttgtcctttataattaa--ttcataatttcagtagactagtcgttttgggtagata |
13148073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 13150545 - 13150617
Alignment:
| Q |
17 |
agcacaaagtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttat |
90 |
Q |
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||||||||| |||||||||||| |||||||||||||||| | |||||||||| ||| |||| ||||||||||| |
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| T |
13150545 |
agcacaaaggagtgtaataaaa-cttgagtattaggctgtgccctatacttactttgacaagccacatatttat |
13150617 |
T |
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