View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_89 (Length: 305)
Name: NF11930_low_89
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 9585549 - 9585825
Alignment:
| Q |
17 |
accatatagctctctagaccagttcaggtctcacacccaagtattttcaactttcctcctcatatttgacaccaggctccttacacaatgatagggaata |
116 |
Q |
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| T |
9585549 |
accatatagctctctagaccagttcaggtctcacacccaagtattttcaactttcctcctcatatttgatgccaggctccttacacaatgatagggaata |
9585648 |
T |
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| Q |
117 |
aagccgatcgatccttctttttaaggtggttccaccaacccattcgtcgctccaaaaatatgtgtcctcacct-cccccggtttgaaaaccaattatgat |
215 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
9585649 |
aagccgatcgatcctcctttttaatgtggttccaccaacccattcgtcgctccaaaa--atgtgtcctcacctccccccggtttgaaaaccaattatgat |
9585746 |
T |
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| Q |
216 |
tatctcccgatcccctactccactctctcaatctcttaaccaacgagacgagtatctcgtgttacatttaattttctctgc |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
9585747 |
tatctcccgatcccctactcca--ctctcaatctcttaaccaaagagacgagtatctcgtgttacatttaattttccctgc |
9585825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 9580034 - 9580316
Alignment:
| Q |
29 |
tctagaccagttcaggtctcacacccaagtattttcaactttcctcctcatatttgacacc--aggctccttacacaatgatagggaataaagccgatcg |
126 |
Q |
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||||||||||| |||||| ||| | ||||| ||||||||||||||| || ||| ||| || || ||||||||||||||||||||||||||| | ||| |
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| T |
9580034 |
tctagaccagtgcaggtcccacgctcaagtgttttcaactttcctcatcgtatctgaaactctagcctccttacacaatgatagggaataaagtcagtcg |
9580133 |
T |
|
| Q |
127 |
atccttctttttaaggtggttccaccaacccattcgtcgctccaaaaatatgtgtcctcacctccc-----------------ccggtttgaaaaccaat |
209 |
Q |
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| | || |||||||||| |||||||||| ||||||||||||||||| ||||| |||| | |||| || |||||||||||||| |
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| T |
9580134 |
aaac-tccttttaaggtgactccaccaacctattcgtcgctccaaaaaaatgtgccctcgcttccccccatatttctacgaaaccagtttgaaaaccaat |
9580232 |
T |
|
| Q |
210 |
tatgattatctcccgatcccctactccactctctcaa--tctcttaaccaacgagacgagtatctcgtgttacatttaattttc |
291 |
Q |
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|||||||| ||||| ||||| |||||||||||||||| |||||||| || |||||| | || ||||||||||||||||||| |
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| T |
9580233 |
tatgattacctcccaatcccttactccactctctcaatctctcttaattaaagagacggatctcacgtgttacatttaattttc |
9580316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 32718303 - 32718147
Alignment:
| Q |
20 |
atatagctctctagaccagttcaggtctcacacccaagtattttcaactttcctcct--catatttgacaccaggctccttacacaatgatagggaataa |
117 |
Q |
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||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||| ||||| ||| | || |||||||| ||||| ||||||||| |
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| T |
32718303 |
atatagcgctctagaccagtgcagatcccacacccaagtattttcaactttcctcctcacatatgagactctagcttccttacataatgacagggaataa |
32718204 |
T |
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| Q |
118 |
agccgatcgatccttctttttaaggtggttccaccaacccattcgtcgctccaaaaa |
174 |
Q |
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| | | || | || |||||||||||| | ||||||||||||| || |||||||| |
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| T |
32718203 |
atcaggtcaaaccccctttttaaggtgactgcaccaacccattcatcagtccaaaaa |
32718147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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