View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11930_low_93 (Length: 299)
Name: NF11930_low_93
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_93 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 42685773 - 42685489
Alignment:
| Q |
1 |
atgccgaagagaataacatgtttttcgtacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatactggaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685773 |
atgccgaagagaataacatgtttttcatacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatactggaatgg |
42685674 |
T |
|
| Q |
101 |
aaaccattagagctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgnnnnnnnngtttataatctatttccttgatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42685673 |
aaaccattagagctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgttttttttgtttataatctatttccttgatacc |
42685574 |
T |
|
| Q |
201 |
attgttgggtagtttgaatgctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaactgtttagttttt |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685573 |
attgttggctagtttgaatgctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaactgtttagttttt |
42685489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University