View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11930_low_97 (Length: 289)
Name: NF11930_low_97
Description: NF11930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11930_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 54 - 285
Target Start/End: Complemental strand, 7104449 - 7104226
Alignment:
| Q |
54 |
tgtaaaaaactatgaacatcttgacttcaatgttatgtatttgatgtctcccatcgaaaccacctaagatgagattataccatctttttctctcgaatga |
153 |
Q |
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| T |
7104449 |
tgtaaaaaactatgaacatctagacttcaatgttatgtatttgatgtctcccatcgaaaccacctaagatgagattataccatctttttctctagaatga |
7104350 |
T |
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| Q |
154 |
ttgaatttctagtcttatgttttcttgggtagaagtaacattttctgcaaaagactttagaatacgcactcattctaatagggaaagttgtttcaaactt |
253 |
Q |
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| T |
7104349 |
ttgaatttctagtcttatgttgtcttgggtagaagtaacattttctgcaaaagactttagaat--------attctaatagggaaagttgtttgaaactt |
7104258 |
T |
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| Q |
254 |
actattgtatctctatgttaccttttatatac |
285 |
Q |
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| T |
7104257 |
actgttgtatctctatgttaccttttatatac |
7104226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 54 - 267
Target Start/End: Complemental strand, 7109732 - 7109519
Alignment:
| Q |
54 |
tgtaaaaaactatgaacatcttgacttcaatgttatgtatttgatgtctcccatcgaaaccacctaagatgagattataccatctttttctctcgaatga |
153 |
Q |
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| T |
7109732 |
tgtaaaaaactatgaacatctagacttcaatgttatgtatttgatgtctcccatcaaaaccacctaagatgagattataccatctttttctcttgaatga |
7109633 |
T |
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| Q |
154 |
ttgaatttctagtcttatgttttcttgggtagaagtaacattttctgcaaaagactttagaatacgcactcattctaatagggaaagttgtttcaaactt |
253 |
Q |
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| T |
7109632 |
ttgaatttctagtcttatgttgtcttgggtagaagtaacatgttctgcaaaagactttagaatacgcactcattctaatagggaaagttgtttgaaactt |
7109533 |
T |
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| Q |
254 |
actattgtatctct |
267 |
Q |
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| T |
7109532 |
gctgttgtatctct |
7109519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 7109949 - 7109913
Alignment:
| Q |
12 |
aaaggggttggatgaattgggacatgcccatcctcaa |
48 |
Q |
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| T |
7109949 |
aaaggggttggatgaattgggacatgcccaccctcaa |
7109913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 3502973 - 3503048
Alignment:
| Q |
110 |
aaaccacctaagatgagattataccatctttttctctcgaatgattgaatttctagtcttatgttttcttgggtag |
185 |
Q |
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| T |
3502973 |
aaaccacctaagttgagattggaccatctttttctctctaacgattgactttgtagtcctatcttatcttgtgtag |
3503048 |
T |
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