View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11931_high_1 (Length: 632)

Name: NF11931_high_1
Description: NF11931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11931_high_1
NF11931_high_1
[»] chr3 (13 HSPs)
chr3 (15-616)||(9995905-9996506)
chr3 (15-616)||(10216922-10217524)
chr3 (276-616)||(10220441-10220786)
chr3 (276-616)||(10226534-10226879)
chr3 (540-612)||(48387369-48387441)
chr3 (15-72)||(10227029-10227086)
chr3 (159-224)||(10377630-10377695)
chr3 (582-616)||(10105806-10105840)
chr3 (311-352)||(10366041-10366082)
chr3 (584-616)||(10105774-10105806)
chr3 (159-201)||(10658567-10658609)
chr3 (534-593)||(1810040-1810100)
chr3 (519-586)||(50211805-50211873)
[»] chr5 (11 HSPs)
chr5 (15-616)||(26796393-26796995)
chr5 (276-616)||(26807461-26807806)
chr5 (276-616)||(26799911-26800256)
chr5 (276-458)||(26815009-26815196)
chr5 (276-458)||(26822646-26822833)
chr5 (15-72)||(26800406-26800463)
chr5 (15-72)||(26807956-26808013)
chr5 (15-72)||(26815346-26815403)
chr5 (15-72)||(26822983-26823040)
chr5 (519-554)||(34862135-34862170)
chr5 (519-563)||(31723899-31723943)
[»] chr4 (4 HSPs)
chr4 (159-249)||(25793934-25794024)
chr4 (519-588)||(24087404-24087474)
chr4 (519-588)||(24091531-24091601)
chr4 (560-593)||(7730663-7730696)
[»] chr1 (3 HSPs)
chr1 (519-596)||(10199340-10199418)
chr1 (519-592)||(18327078-18327152)
chr1 (519-594)||(4757400-4757476)
[»] scaffold0020 (1 HSPs)
scaffold0020 (519-593)||(159905-159980)
[»] chr2 (3 HSPs)
chr2 (519-590)||(15377832-15377903)
chr2 (520-592)||(13866942-13867015)
chr2 (522-593)||(37292293-37292365)
[»] chr7 (2 HSPs)
chr7 (519-549)||(29269474-29269504)
chr7 (564-596)||(36537968-36538000)
[»] chr8 (1 HSPs)
chr8 (189-249)||(11488825-11488888)


Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 616
Target Start/End: Complemental strand, 9996506 - 9995905
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996506 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 9996407  T
Q  115 tcatttcttcaaatacagatcgagtaactaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996406 tcatttcttcaaatacagatcgagtaactaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatta 9996307  T
Q  215 caataacatggtccacttttgttttcaattcatcacatcattagttaaaatcattaaaggataagcataaatcattatttaaaatttggatatgatgaca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996306 caataacatggtccacttttgttttcaattcatcacatcattagttaaaatcattaaaggataagcataaatcattatttaaaatttggatatgatgaca 9996207  T
Q  315 gaggatcctttatgtaatctttcctaggttaaaaaactttgatcaaataannnnnnnnnatggaaatattttttagcactatagttcaattggagaaagt 414  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  9996206 gaggatcttttatgtaatctttcctaggttaaaaaactttgatcaaataatatttttttatggaaatattttttagcactatagttcaattggagaaagt 9996107  T
Q  415 tatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataaatccggattattattactttttggcatacttaaaatccaatcat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||    
T  9996106 tatgtctttgaatgagcttcagaagttaaagtccaatgagaaagttttttttataaatccggattattcttactttttggcatacttaaaatccaatcat 9996007  T
Q  515 aaaattatttgagcttatgtactaacataaacacttctaacactatttggagaacttaaggaaacaacttatgacatgttcaacttattcataagcactt 614  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9996006 aaaattatttgagcttatgtactaacataaacacttctaacattatttggagaacttaaggaaacaacttatgacatgttcaacttattcataaccactt 9995907  T
Q  615 at 616  Q
    ||    
T  9995906 at 9995905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 616
Target Start/End: Complemental strand, 10217524 - 10216922
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217524 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 10217425  T
Q  115 tcatttcttcaaatacagatcgagtaa-ctaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatt 213  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10217424 tcatttcttcaaatacagatcgagtaaactaagtaagtcttctcttgtggcaatgacaaccatttcattcctctcaaacatttttacaggaagaatcatt 10217325  T
Q  214 acaataacatggtccacttttgttttcaattcatcacatcattagttaaaatcattaaaggataagcataaatcattatttaaaatttggatatgatgac 313  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217324 acaataacatgctccacttttgttttcaattcatcacatcattagttaaaatcattaaaggataagcataaatcattatttaaaatttggatatgatgac 10217225  T
Q  314 agaggatcctttatgtaatctttcctaggttaaaaaactttgatcaaataannnnnnnnnatggaaatattttttagcactatagttcaattggagaaag 413  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  10217224 agaggatcttttatgtaatctttcctaggttaaaaaactttgatcaaataatatttttttatggaaatattttttagcactatagttcaattggagaaag 10217125  T
Q  414 ttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataaatccggattattattactttttggcatacttaaaatccaatca 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||||| ||||||||||||||||||||||||||||||    
T  10217124 ttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagttttttttatgaatccggattattcttactttttggcatacttaaaatccaatca 10217025  T
Q  514 taaaattatttgagcttatgtactaacataaacacttctaacactatttggagaacttaaggaaacaacttatgacatgttcaacttattcataagcact 613  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217024 taaaattatttgagcttatgtactaacataaacacttctaacattatttggagaacttaaggaaacaacttatgacatgttcaacttattcataagcact 10216925  T
Q  614 tat 616  Q
    |||    
T  10216924 tat 10216922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 276 - 616
Target Start/End: Complemental strand, 10220786 - 10220441
Alignment:
Q  276 taagcataaatcattatttaaaatttggatatgatgacagaggatcctttat-----gtaatctttcctaggttaaaaaactttgatcaaataannnnnn 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||          
T  10220786 taagcataaatcattatttaaaatttggatatgatgacagaggatcttttattttatgtaatctttcctaggttaaaaaactttgatcaaataatttttt 10220687  T
Q  371 nnnatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataa 470  Q
       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||    
T  10220686 tttatggaaatattttttagcactatatttcaattggagaaagttatgtctttgaatgagcttcagaagttaacgtccaatgagaaagttttttttataa 10220587  T
Q  471 atccggattattattactttttggcatacttaaaatccaatcataaaattatttgagcttatgtactaacataaacacttctaacactatttggagaact 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10220586 atccggattattattactttttggcatacttaaaatccaatcataacattatttgagcttatgtactaacatagacacttctaacactatttggagaact 10220487  T
Q  571 taaggaaacaacttatgacatgttcaacttattcataagcacttat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10220486 taaggaaacaacttatgacatgttcaacttattcataagcacttat 10220441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 276 - 616
Target Start/End: Complemental strand, 10226879 - 10226534
Alignment:
Q  276 taagcataaatcattatttaaaatttggatatgatgacagaggatcctttat-----gtaatctttcctaggttaaaaaactttgatcaaataannnnnn 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||          
T  10226879 taagcataaatcattatttaaaatttggatatgatgacagaggatcttttattttatgtaatctttcctaggttaaaaaactttgatcaaataatttttt 10226780  T
Q  371 nnnatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataa 470  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  10226779 tttatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagttttttttataa 10226680  T
Q  471 atccggattattattactttttggcatacttaaaatccaatcataaaattatttgagcttatgtactaacataaacacttctaacactatttggagaact 570  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10226679 atccggattattattattttttgacatacttaaaatccaatcataaaattatttgagcttatgtactaacatagacacttctaacactatttggagaact 10226580  T
Q  571 taaggaaacaacttatgacatgttcaacttattcataagcacttat 616  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  10226579 taaggaaacaacttatgacatgttcaatttattcataagcacttat 10226534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 48387369 - 48387441
Alignment:
Q  540 cataaacacttctaacactatttggagaacttaaggaaacaacttatgacatgttcaacttattcataagcac 612  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  48387369 catagacacttctaacactacttggagaacttaagaaaacaacttacgacatgttcaacttattcataagcac 48387441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 10227086 - 10227029
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227086 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 10227029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 10377630 - 10377695
Alignment:
Q  159 tgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcattacaataacatg 224  Q
    ||||||||||||  || |||  ||||||||||| ||||||||| ||||||||||||||||||||||    
T  10377630 tgtggcaatgacggccgttttgctcctctcaaatatttttacaagaagaatcattacaataacatg 10377695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 616
Target Start/End: Complemental strand, 10105840 - 10105806
Alignment:
Q  582 cttatgacatgttcaacttattcataagcacttat 616  Q
    |||||||||||||||||||||||||||||||||||    
T  10105840 cttatgacatgttcaacttattcataagcacttat 10105806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 10366041 - 10366082
Alignment:
Q  311 gacagaggatcctttatgtaatctttcctaggttaaaaaact 352  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  10366041 gacagaggatcttttatgtaatctttccaaggttaaaaaact 10366082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 10105806 - 10105774
Alignment:
Q  584 tatgacatgttcaacttattcataagcacttat 616  Q
    |||||||||||||||||||||||||||||||||    
T  10105806 tatgacatgttcaacttattcataagcacttat 10105774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 10658609 - 10658567
Alignment:
Q  159 tgtggcaatgacaaccatttcactcctctcaaacatttttaca 201  Q
    ||||||| ||||||||||||  |||||||||||||||||||||    
T  10658609 tgtggcagtgacaaccattttgctcctctcaaacatttttaca 10658567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 1810100 - 1810040
Alignment:
Q  534 tactaacataaacacttctaacactatttg-gagaacttaaggaaacaacttatgacatgt 593  Q
    ||||||||||| ||||| | | |||||||| |||| |||| ||||||||||||||||||||    
T  1810100 tactaacataatcacttgtgagactatttgagagagcttacggaaacaacttatgacatgt 1810040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 586
Target Start/End: Complemental strand, 50211873 - 50211805
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacactatttg-gagaacttaaggaaacaacttat 586  Q
    |||||| ||||||| ||||||||||| ||||| ||| ||| |||| ||||||||| | |||||||||||    
T  50211873 ttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 15 - 616
Target Start/End: Complemental strand, 26796995 - 26796393
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796995 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaaaggttcaaccatcagtgccaattgcagtttggctaacaactt 26796896  T
Q  115 tcatttcttcaaatacagatcgagtaa-ctaattaagtcttctcttgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcatt 213  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26796895 tcatttcttcaaatacagatcgagtaaactaagtaagtcttctcttgtggcaatgacaaccatttcattcctctcaaacatttttacaggaagaatcatt 26796796  T
Q  214 acaataacatggtccacttttgttttcaattcatcacatcattagttaaaatcattaaaggataagcataaatcattatttaaaatttggatatgatgac 313  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796795 acaataacatgctccacttttgttttcaattcatcacatcattagttaaaatcattaaaggataagcataaatcattatttaaaatttggatatgatgac 26796696  T
Q  314 agaggatcctttatgtaatctttcctaggttaaaaaactttgatcaaataannnnnnnnnatggaaatattttttagcactatagttcaattggagaaag 413  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  26796695 agaggatcttttatgtaatctttcctaggttaaaaaactttgatcaaataatatttttttatggaaatattttttagcactatagttcaattggagaaag 26796596  T
Q  414 ttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataaatccggattattattactttttggcatacttaaaatccaatca 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||||||    
T  26796595 ttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagttttttttataaatccggattattcttactttttggcatacttaaaatccaatca 26796496  T
Q  514 taaaattatttgagcttatgtactaacataaacacttctaacactatttggagaacttaaggaaacaacttatgacatgttcaacttattcataagcact 613  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796495 taaaattatttgagcttatgtactaacataaacacttctaacattatttggagaacttaaggaaacaacttatgacatgttcaacttattcataagcact 26796396  T
Q  614 tat 616  Q
    |||    
T  26796395 tat 26796393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 276 - 616
Target Start/End: Complemental strand, 26807806 - 26807461
Alignment:
Q  276 taagcataaatcattatttaaaatttggatatgatgacagaggatcctttat-----gtaatctttcctaggttaaaaaactttgatcaaataannnnnn 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||          
T  26807806 taagcataaatcattatttaaaatttggatatgatgacagaggatcttttattttatgtaatctttcctaggttaaaaaactttgatcaaataatatttt 26807707  T
Q  371 nnnatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataa 470  Q
       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  26807706 tttatggaaatattttttagcactataattcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagttttttttataa 26807607  T
Q  471 atccggattattattactttttggcatacttaaaatccaatcataaaattatttgagcttatgtactaacataaacacttctaacactatttggagaact 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26807606 atccggattattattactttttggcatacttaaaatccaatcataaaattatttgagcttatgtactaacatagacacttctaacactatttggagaact 26807507  T
Q  571 taaggaaacaacttatgacatgttcaacttattcataagcacttat 616  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  26807506 taaggaaacaacttatgacatgttcaacttattcataaacacttat 26807461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 276 - 616
Target Start/End: Complemental strand, 26800256 - 26799911
Alignment:
Q  276 taagcataaatcattatttaaaatttggatatgatgacagaggatcctttat-----gtaatctttcctaggttaaaaaactttgatcaaataannnnnn 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||          
T  26800256 taagcataaatcattatttaaaatttggatatgatgacagaggatcttttattttatgtaatctttcctaggttaaaaaactttgatcaaataatttttt 26800157  T
Q  371 nnnatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaagnnnnnnnnataa 470  Q
       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||    
T  26800156 tttatggaaatattttttagcactatatttcaattggagaaagttatgtctttgaatgagcttcagaagttaacgtccaatgagaaagttttttttataa 26800057  T
Q  471 atccggattattattactttttggcatacttaaaatccaatcataaaattatttgagcttatgtactaacataaacacttctaacactatttggagaact 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26800056 atccggattattattactttttggcatacttaaaatccaatcataacattatttgagcttatgtactaacatagacacttctaacactatttggagaact 26799957  T
Q  571 taaggaaacaacttatgacatgttcaacttattcataagcacttat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26799956 taaggaaacaacttatgacatgttcaacttattcataagcacttat 26799911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 276 - 458
Target Start/End: Complemental strand, 26815196 - 26815009
Alignment:
Q  276 taagcataaatcattatttaaaatttggatatgatgacagaggatcctttat-----gtaatctttcctaggttaaaaaactttgatcaaataannnnnn 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||          
T  26815196 taagcataaatcattatttaaaatttggatatgatgacagaggatcttttattttatgtaatctttcctaggttaaaaaactttgatcaaataatttttt 26815097  T
Q  371 nnnatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaag 458  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815096 tttatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaag 26815009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 276 - 458
Target Start/End: Complemental strand, 26822833 - 26822646
Alignment:
Q  276 taagcataaatcattatttaaaatttggatatgatgacagaggatcctttat-----gtaatctttcctaggttaaaaaactttgatcaaataannnnnn 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||          
T  26822833 taagcataaatcattatttaaaatttggatatgatgacagaggatcttttattttatgtaatctttcctaggttaaaaaactttgatcaaataatttttt 26822734  T
Q  371 nnnatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaag 458  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26822733 tttatggaaatattttttagcactatagttcaattggagaaagttatgtctttgaatgagcttcagaagttaaagtccaatgagaaag 26822646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26800463 - 26800406
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26800463 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26800406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26808013 - 26807956
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26808013 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26807956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26815403 - 26815346
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815403 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26815346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26823040 - 26822983
Alignment:
Q  15 atgaagattgaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26823040 atgaagattaaaggatagaattttccttgaaagtaaagagcaaagactcacatgtgaa 26822983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 554
Target Start/End: Complemental strand, 34862170 - 34862135
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaa 554  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34862170 ttatttgagcttatgtacttacataaacacttctaa 34862135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 31723943 - 31723899
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacactatttg 563  Q
    |||||||||||||||||||| ||||||||||| | | ||||||||    
T  31723943 ttatttgagcttatgtactagcataaacacttatgagactatttg 31723899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 25794024 - 25793934
Alignment:
Q  159 tgtggcaatgacaaccatttcactcctctcaaacatttttacaggaagaatcattacaataacatggtccacttttgttttcaattcatca 249  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||| |||||||    
T  25794024 tgtggcaattacaaccaatttgctcctctcaaacatttttacaagaagaatcattacaataacatgccctacttttgttttcagttcatca 25793934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 24087474 - 24087404
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacact-atttggagaacttaaggaaacaacttatga 588  Q
    ||||||||| |||| |||||||||||||||||   | |||  ||||||||||||| |||||||||||||||    
T  24087474 ttatttgagtttatctactaacataaacacttgccaaactgttttggagaacttatggaaacaacttatga 24087404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 24091601 - 24091531
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacact-atttggagaacttaaggaaacaacttatga 588  Q
    ||||||||| |||| |||||||||||||||||   | |||  ||||||||||||| |||||||||||||||    
T  24091601 ttatttgagtttatctactaacataaacacttgccaaactgttttggagaacttatggaaacaacttatga 24091531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 593
Target Start/End: Complemental strand, 7730696 - 7730663
Alignment:
Q  560 tttggagaacttaaggaaacaacttatgacatgt 593  Q
    |||||||| |||||||||||||||||||||||||    
T  7730696 tttggagagcttaaggaaacaacttatgacatgt 7730663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 596
Target Start/End: Original strand, 10199340 - 10199418
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacactattt-ggagaacttaaggaaacaacttatgacatgttca 596  Q
    |||||||||||||| ||||||||||| ||||| | ||||||||| |||||||| | | ||| | |||||||||||||||    
T  10199340 ttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttca 10199418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 592
Target Start/End: Original strand, 18327078 - 18327152
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacactatttgg-agaacttaaggaaacaacttatgacatg 592  Q
    |||||||||||||| ||||  ||||| ||||| | ||||||||||| |||||||| | |||||||||||||||||    
T  18327078 ttatttgagcttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaacttatgacatg 18327152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 594
Target Start/End: Complemental strand, 4757476 - 4757400
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacactatttgg-agaacttaaggaaacaacttatgacatgtt 594  Q
    |||||||||||||| || | |||||||||||| | | || |||||| |||||||| | |||||||||||||||||||    
T  4757476 ttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacatgtt 4757400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 593
Target Start/End: Original strand, 159905 - 159980
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacacta-tttggagaacttaaggaaacaacttatgacatgt 593  Q
    |||||||||||||| |||||| |||||||||| | | |||| ||||||||||| | |||||||  |||||||||||    
T  159905 ttatttgagcttatctactaatataaacacttgtgaaactattttggagaactaatggaaacagtttatgacatgt 159980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 590
Target Start/End: Complemental strand, 15377903 - 15377832
Alignment:
Q  519 ttatttgagcttatgtactaacataaacacttctaacactatttggagaacttaaggaaacaacttatgaca 590  Q
    |||||||||||||||||||||||||| || || |||  || |||||| ||  || |||||||||||||||||    
T  15377903 ttatttgagcttatgtactaacataagcaattgtaaggctgtttggaaaatctatggaaacaacttatgaca 15377832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 592
Target Start/End: Complemental strand, 13867015 - 13866942
Alignment:
Q  520 tatttgagcttatgtactaacataaacacttctaacactatttg-gagaacttaaggaaacaacttatgacatg 592  Q
    ||||||||||||| ||||  ||||||||||| | | ||| |||| ||||||||||| ||||||| |||||||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacatg 13866942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 593
Target Start/End: Original strand, 37292293 - 37292365
Alignment:
Q  522 tttgagcttatgtactaacataaacacttctaacactattt-ggagaacttaaggaaacaacttatgacatgt 593  Q
    ||||||||||| |||||| | || ||||||| | ||||||| ||||  ||||||||||||| |||||||||||    
T  37292293 tttgagcttatctactaaaacaagcacttctgagactatttaggagtgcttaaggaaacaatttatgacatgt 37292365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 549
Target Start/End: Complemental strand, 29269504 - 29269474
Alignment:
Q  519 ttatttgagcttatgtactaacataaacact 549  Q
    |||||||||||||||||||||||||||||||    
T  29269504 ttatttgagcttatgtactaacataaacact 29269474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 596
Target Start/End: Complemental strand, 36538000 - 36537968
Alignment:
Q  564 gagaacttaaggaaacaacttatgacatgttca 596  Q
    ||||||||| |||||||||||||||||||||||    
T  36538000 gagaacttatggaaacaacttatgacatgttca 36537968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 11488888 - 11488825
Alignment:
Q  189 aaacatttttacaggaagaatcattacaa---taacatggtccacttttgttttcaattcatca 249  Q
    ||||||||||||| |||||||||| | ||   ||||||| ||||||||||| ||||||||||||    
T  11488888 aaacatttttacaagaagaatcatgataaaaataacatgctccacttttgtcttcaattcatca 11488825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University