View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11931_high_2 (Length: 512)
Name: NF11931_high_2
Description: NF11931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11931_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 169 - 489
Target Start/End: Complemental strand, 9026054 - 9025734
Alignment:
| Q |
169 |
gagattaatttaaagtggagtcattatttattcttgtcgtttgatttgataaatatggttactgttgatttcattttcattatggcaatgagaattgaga |
268 |
Q |
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| T |
9026054 |
gagattaatttaaagtggagtcattatttattcttgtcgtttgatttgataaatatggttactatggatttcattttcattatggcaatgagaattgaaa |
9025955 |
T |
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| Q |
269 |
tattctttactatgcttgggttttatagtttaattttattttggaattttattgtttgcccaaaataaattatctttattgttgaaatagtaacacatgt |
368 |
Q |
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| T |
9025954 |
tattctttactatgtttgggttttatggtttaattttattttggaattttattgtttgcccaaaataaattatctttattcttgaaatagtaccacatgt |
9025855 |
T |
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| Q |
369 |
gaattgtgaacgtgtcaatgaatcagctgaagaggttcaatgaattgtgtggttgaactgtgaatcgatgatagaatgtcaatgtacaattttcaaaaac |
468 |
Q |
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| T |
9025854 |
gaattgtgaacgtgtcaatgaatcagctgaagaggttcaatgaattgtgtggttgaactgtgaattgatgatataatgtcaatgtacaattttcaaaaac |
9025755 |
T |
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| Q |
469 |
actgtttacgtgtttcggatg |
489 |
Q |
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| T |
9025754 |
actgtttacgtgtttcagatg |
9025734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 9026134 - 9026063
Alignment:
| Q |
20 |
gggcctaggatatgaagtgtgaaaaagaaaaacaagggtttgagttatgttcccttgcaaaagaaatggaaa |
91 |
Q |
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| T |
9026134 |
gggcctaagatatgaagtgtgaaaaagaaaaacaagggtttgagttatgttcccttggaaaagaaatggaaa |
9026063 |
T |
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