View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11931_high_3 (Length: 409)

Name: NF11931_high_3
Description: NF11931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11931_high_3
NF11931_high_3
[»] chr3 (3 HSPs)
chr3 (9-391)||(3904164-3904547)
chr3 (231-295)||(7946078-7946142)
chr3 (27-85)||(29501013-29501071)
[»] scaffold0137 (1 HSPs)
scaffold0137 (9-391)||(11020-11403)
[»] chr1 (3 HSPs)
chr1 (17-85)||(88912-88980)
chr1 (232-282)||(31649898-31649948)
chr1 (241-281)||(4499512-4499552)
[»] chr8 (2 HSPs)
chr8 (19-85)||(38860440-38860506)
chr8 (27-75)||(9821672-9821720)
[»] chr5 (1 HSPs)
chr5 (175-295)||(39850009-39850127)
[»] chr4 (3 HSPs)
chr4 (41-139)||(24911756-24911853)
chr4 (220-282)||(24911928-24911990)
chr4 (27-85)||(38985578-38985636)
[»] chr2 (2 HSPs)
chr2 (43-168)||(24197946-24198069)
chr2 (232-282)||(35893290-35893340)
[»] chr7 (1 HSPs)
chr7 (241-282)||(14653747-14653788)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 3904164 - 3904547
Alignment:
Q  9 agagattcggaaaaaggatagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcgttgatattgaatt 108  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3904164 agagatttggaataaggatagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcattgatattgaatt 3904263  T
Q  109 ggagagacctctcttcttgagacgtaggtcattgttgggtcgaactcgataaataaatatcg-----ttttttcttcttctcctttatctatttttatta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  3904264 ggagagacctctcttcttgagacgtaggtcattgttgggtcgaactcgataaataaatatcgatgcgttttttcttcttctcctttatctatttttatta 3904363  T
Q  204 tcggtgtttgtttgtttgatcaatttagtttgattgctgctaattttgctttacacatcaaagtattggtgtgagttttaatcgaattcacagcaggttg 303  Q
    ||||||||    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3904364 tcggtgtt----tgtttgattaatttagtttgattgctgctaattttgctctacacatcaaagtattggtgtgagttttaatcgaattcacagcaggttg 3904459  T
Q  304 tttacttatattattattgacaagctgactctattattttttaaggaaacatgaatgggtcaacaattccaatagttgaaggtgtaga 391  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3904460 tttacttatattattattgacaagctgactctattaatttttaaggaaacatgaatggggcaacaattccaatagttgaaggtgtaga 3904547  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 7946078 - 7946142
Alignment:
Q  231 gtttgattgctgctaattttgctttacacatcaaagtattggtgtgagttttaatcgaattcaca 295  Q
    ||||||||| |||||||||||||| |||||| ||||||| | |||||||||| || |||||||||    
T  7946078 gtttgattgatgctaattttgcttcacacattaaagtatcgatgtgagttttgattgaattcaca 7946142  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 29501071 - 29501013
Alignment:
Q  27 tagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaa 85  Q
    |||||||||| ||| |||||| |||| |||||| |||||||||||||||| ||| ||||    
T  29501071 tagaaattagagttaattgttgaaggataatttcttgtaacccttgtatcccttcgtaa 29501013  T

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Target: scaffold0137 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 11020 - 11403
Alignment:
Q  9 agagattcggaaaaaggatagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcgttgatattgaatt 108  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11020 agagatttggaataaggatagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcgttgatattgaatt 11119  T
Q  109 ggagagacctctcttcttgagacgtaggtcattgttgggtcgaactcgataaataaatatc-----gttttttcttcttctcctttatctatttttatta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||| |||    
T  11120 ggagagacctctcttcttgagacgtaggtcattgttgggtcgaactcgataaataaatatccatgcgttttttcttcttctcctttatctatttttgtta 11219  T
Q  204 tcggtgtttgtttgtttgatcaatttagtttgattgctgctaattttgctttacacatcaaagtattggtgtgagttttaatcgaattcacagcaggttg 303  Q
    ||||||||    |||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  11220 tcggtgtt----tgtttgattaattcagtttgattgctgctaattttgctctacacatcaaagtgttggtgtgatttttaatagaattcacagcaggttg 11315  T
Q  304 tttacttatattattattgacaagctgactctattattttttaaggaaacatgaatgggtcaacaattccaatagttgaaggtgtaga 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11316 tttacttatattattattgacaagctgactctattattttttaaggaaacatgaatgggtcaacaattccaatagttgaaggtgtaga 11403  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 88980 - 88912
Alignment:
Q  17 ggaaaaaggatagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaa 85  Q
    ||||||| |||||||||||| |||||||||| | ||||||||| ||||||| ||||||| |||| ||||    
T  88980 ggaaaaatgatagaaattagagtttattgttaatggttaatttcttgtaactcttgtatatctttgtaa 88912  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 31649898 - 31649948
Alignment:
Q  232 tttgattgctgctaattttgctttacacatcaaagtattggtgtgagtttt 282  Q
    |||| ||||||||| |||||||  |||||||||| ||||||||||||||||    
T  31649898 tttggttgctgctatttttgctccacacatcaaaatattggtgtgagtttt 31649948  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 4499512 - 4499552
Alignment:
Q  241 tgctaattttgctttacacatcaaagtattggtgtgagttt 281  Q
    |||||||||||||| ||| |||||||||| |||||||||||    
T  4499512 tgctaattttgcttcacaaatcaaagtatcggtgtgagttt 4499552  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 38860506 - 38860440
Alignment:
Q  19 aaaaaggatagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaa 85  Q
    ||||||| ||||||||||||||||||||| |||| |||||| || ||||  ||||||||||| ||||    
T  38860506 aaaaagggtagaaattagggtttattgttgaaggctaatttcttataactattgtatctctttgtaa 38860440  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 9821720 - 9821672
Alignment:
Q  27 tagaaattagggtttattgtttaaggttaattttttgtaacccttgtat 75  Q
    ||||||||||||||||||||| |||| | |||  |||||||||||||||    
T  9821720 tagaaattagggtttattgttaaaggcttattacttgtaacccttgtat 9821672  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 39850127 - 39850009
Alignment:
Q  175 ttcttcttctcctttatctatttttattatcggtgtttgtttgtttgatcaatttagtt--tgattgctgctaattttgctttacacatcaaagtattgg 272  Q
    |||||||||||||||||||  |||||||    || | |||||||||||||| ||| |||  || | | || ||||||||||    |||||||| ||||||    
T  39850127 ttcttcttctcctttatcttattttatt----gtttgtgtttgtttgatcactttggttattggtcgttgttaattttgctcctgacatcaaaatattgg 39850032  T
Q  273 tgtgagttttaatcgaattcaca 295  Q
    |||||||||||||||||||||||    
T  39850031 tgtgagttttaatcgaattcaca 39850009  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 24911756 - 24911853
Alignment:
Q  41 tattgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcgttgatattgaattggagagacctctcttcttgagacgtaggtca 139  Q
    ||||||| |||| |||||| ||||||||||||| ||| || |||| | |||||| |||||| ||||||||||||| || ||| ||  ||||||||||||    
T  24911756 tattgttgaagggtaatttcttgtaacccttgtttctttttgtaa-agaaactctttgataatgaattggagagatctatctcctctagacgtaggtca 24911853  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 24911928 - 24911990
Alignment:
Q  220 tgatcaatttagtttgattgctgctaattttgctttacacatcaaagtattggtgtgagtttt 282  Q
    |||||| ||| ||||  ||||| |||||||||||  |||||||||||||||||||| ||||||    
T  24911928 tgatcactttggtttagttgctactaattttgctccacacatcaaagtattggtgtaagtttt 24911990  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 38985636 - 38985578
Alignment:
Q  27 tagaaattagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaa 85  Q
    |||||||||||||||||| || ||| || |||| |||||||| ||||||||||| ||||    
T  38985636 tagaaattagggtttattattgaagatttatttcttgtaaccattgtatctctttgtaa 38985578  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 24197946 - 24198069
Alignment:
Q  43 ttgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcgttgatattgaattggagagacctctcttcttgagacgtaggtcattg 142  Q
    ||||| |||| |||||| |||||||||||||||||||| | |  | |||||| |||||| || |||||||||| || ||||||  ||||||||||||       
T  24197946 ttgttgaaggctaatttcttgtaacccttgtatctctttgca--agaaactctttgataatggattggagagatctatcttctccagacgtaggtcacgt 24198043  T
Q  143 ttgggtcgaactcgataaataaatat 168  Q
    ||||| |||||| | |||| ||||||    
T  24198044 ttgggccgaactgggtaaacaaatat 24198069  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 35893340 - 35893290
Alignment:
Q  232 tttgattgctgctaattttgctttacacatcaaagtattggtgtgagtttt 282  Q
    |||| |||||||||||||||||  |  ||||||||||||||||||||||||    
T  35893340 tttggttgctgctaattttgctcaatgcatcaaagtattggtgtgagtttt 35893290  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 14653788 - 14653747
Alignment:
Q  241 tgctaattttgctttacacatcaaagtattggtgtgagtttt 282  Q
    |||||||||||||  ||| |||||||||||||||||||||||    
T  14653788 tgctaattttgctccacatatcaaagtattggtgtgagtttt 14653747  T

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