View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11931_high_4 (Length: 357)

Name: NF11931_high_4
Description: NF11931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11931_high_4
NF11931_high_4
[»] chr6 (4 HSPs)
chr6 (202-336)||(29296866-29296999)
chr6 (12-111)||(29301275-29301373)
chr6 (12-103)||(29307939-29308029)
chr6 (250-315)||(29308088-29308157)
[»] chr2 (1 HSPs)
chr2 (12-48)||(26666613-26666649)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 336
Target Start/End: Original strand, 29296866 - 29296999
Alignment:
Q  202 atatagaagtagtgcctaaggatgactctgaattttggttcctggggtttttaaggtataagaatgttacgaagaatcttaataaagccatttccatggc 301  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||| | ||  |||||||| ||||| ||||||||||||||    
T  29296866 atatagaagtagtgactaaggatgactctgaattttggttcatgggatttttaaggtatgagaaagctatcaagaatctcaataatgccatttccatggc 29296965  T
Q  302 caataaattctaaataggaaaacttgaacatagtt 336  Q
    ||||||||||| || ||||||||||||||||||||    
T  29296966 caataaattctgaa-aggaaaacttgaacatagtt 29296999  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 29301275 - 29301373
Alignment:
Q  12 tacacaagctcaaaagtagaccattgcagaatatgatatannnnnnnccttctcaaatttctgccgcttactataatcactttgatcgtcatcagcaagc 111  Q
    |||||||||||||||||||||||||||||||||||||||        ||||| ||| ||||||||||||||| |||||||||||||| |||||| |||||    
T  29301275 tacacaagctcaaaagtagaccattgcagaatatgatat-gtttgttccttcacaattttctgccgcttactttaatcactttgatcatcatcaacaagc 29301373  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 29307939 - 29308029
Alignment:
Q  12 tacacaagctcaaaagtagaccattgcagaatatgatatannnnnnnccttctcaaatttctgccgcttactataatcactttgatcgtcat 103  Q
    |||||||||||||||||||||||||||||||||||||||        |||| | || ||||||||||||||| |||||| ||||||||||||    
T  29307939 tacacaagctcaaaagtagaccattgcagaatatgatat-gtttgttccttttaaattttctgccgcttactttaatcaatttgatcgtcat 29308029  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 29308088 - 29308157
Alignment:
Q  250 ttttaaggtataagaatgttacgaagaatcttaataaagcc----atttccatggccaataaattctaaa 315  Q
    |||||||||||||||| | ||  |||||||| |||||||||    |||||||||||||||||||||||||    
T  29308088 ttttaaggtataagaaagctatcaagaatctcaataaagccagccatttccatggccaataaattctaaa 29308157  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 26666613 - 26666649
Alignment:
Q  12 tacacaagctcaaaagtagaccattgcagaatatgat 48  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26666613 tacacaagctcaaaagtagaccattgcagaacatgat 26666649  T

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