View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11931_high_6 (Length: 275)
Name: NF11931_high_6
Description: NF11931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11931_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 9025727 - 9025551
Alignment:
| Q |
18 |
tgaccagcttttgcatgttctactcaatctatcaatttgtgatcaactacgactaattggtagattttgtcagcaaaaaacagtgttagatcttctattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |
|
|
| T |
9025727 |
tgaccagcttttgcatgttctactcaatctgtcaatttgtgatcaactacgactaattggtacattttgtcagcaaaaaacagcggtagatcttctattg |
9025628 |
T |
|
| Q |
118 |
aataattgaaattgtaatgccttttgtatgaccaaaaatg---tgaatactaatatttcaatacttcatgttcttgg |
191 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
9025627 |
aataattgaaattataatgccttttgtatgaccaaaaatgtgatgaatactaatattttaatacttcatgctcttgg |
9025551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University