View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11931_low_4 (Length: 357)
Name: NF11931_low_4
Description: NF11931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11931_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 336
Target Start/End: Original strand, 29296866 - 29296999
Alignment:
| Q |
202 |
atatagaagtagtgcctaaggatgactctgaattttggttcctggggtttttaaggtataagaatgttacgaagaatcttaataaagccatttccatggc |
301 |
Q |
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| T |
29296866 |
atatagaagtagtgactaaggatgactctgaattttggttcatgggatttttaaggtatgagaaagctatcaagaatctcaataatgccatttccatggc |
29296965 |
T |
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| Q |
302 |
caataaattctaaataggaaaacttgaacatagtt |
336 |
Q |
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| T |
29296966 |
caataaattctgaa-aggaaaacttgaacatagtt |
29296999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 29301275 - 29301373
Alignment:
| Q |
12 |
tacacaagctcaaaagtagaccattgcagaatatgatatannnnnnnccttctcaaatttctgccgcttactataatcactttgatcgtcatcagcaagc |
111 |
Q |
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| T |
29301275 |
tacacaagctcaaaagtagaccattgcagaatatgatat-gtttgttccttcacaattttctgccgcttactttaatcactttgatcatcatcaacaagc |
29301373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 29307939 - 29308029
Alignment:
| Q |
12 |
tacacaagctcaaaagtagaccattgcagaatatgatatannnnnnnccttctcaaatttctgccgcttactataatcactttgatcgtcat |
103 |
Q |
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| T |
29307939 |
tacacaagctcaaaagtagaccattgcagaatatgatat-gtttgttccttttaaattttctgccgcttactttaatcaatttgatcgtcat |
29308029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 29308088 - 29308157
Alignment:
| Q |
250 |
ttttaaggtataagaatgttacgaagaatcttaataaagcc----atttccatggccaataaattctaaa |
315 |
Q |
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| T |
29308088 |
ttttaaggtataagaaagctatcaagaatctcaataaagccagccatttccatggccaataaattctaaa |
29308157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 26666613 - 26666649
Alignment:
| Q |
12 |
tacacaagctcaaaagtagaccattgcagaatatgat |
48 |
Q |
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| T |
26666613 |
tacacaagctcaaaagtagaccattgcagaacatgat |
26666649 |
T |
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