View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_10 (Length: 655)
Name: NF11932_high_10
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 25 - 642
Target Start/End: Original strand, 34547056 - 34547670
Alignment:
| Q |
25 |
atcacagggttgtggtggtggtgatggaggccaggggatctctcgatctcatcttcctcatagataaccctcttgttgaaggccatctcggcatttgggt |
124 |
Q |
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| T |
34547056 |
atcacagggttgtggtggtggtgatggaggccaggggatctctcgatatcatcttcctcatagataaccctcttgttgaaggccatctcggcatttgggt |
34547155 |
T |
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| Q |
125 |
agcgagggacgtcggtgagaatacttggctcccttctgacacctgaaatgtgggagaggtagtcctcggatctcaacatgatgtctttcttctttgtttt |
224 |
Q |
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| T |
34547156 |
agcgagggacgtcggtgagaatacttggctcccttctgacacctgaaatgtgggagaggtagtcctcggatctcaacatgatgtctttcttctttgtttt |
34547255 |
T |
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| Q |
225 |
tagataacacttgcttaattactgcctcaaccgtgcatgtatttatatcagcaaatatatatggcatatgctattcgctattctcaatattattcaaagt |
324 |
Q |
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| T |
34547256 |
tagataacacttgcttaattactgcctcaaccgtgcatgtatttatatcaacaaatatatatggcatatgctattcgttattctcaatattatttaaagt |
34547355 |
T |
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| Q |
325 |
gatagtaataaattgaatctaattcccttcatgcacctgactacagccaacaattgctaaaaagatgatatggtggagggaaaagaggttgtgcaaaaac |
424 |
Q |
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| T |
34547356 |
gatagtaataaattgaatctaattcccttcatgcacctgactacagccaacaattgctaaaaagaagatatggtggagggaaaagaggttgtgcaaaaac |
34547455 |
T |
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| Q |
425 |
aatgtggttcattgttctttgcatgttatgtgaccaaattggcgcgtcatttcaatagaaaaataccggtagataagagacaaatagatatcattccgac |
524 |
Q |
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| T |
34547456 |
aatgtggttcattgttctttgcatgttatgtgaccaaattggcgcgtcatttcaatagaaaaataccggtaaataagagacaaatagatatcattccgac |
34547555 |
T |
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| Q |
525 |
aaacatcgatttgtctcttgtt-nnnnnnnnnnngatgtttatccgattgatatatattgtaattaagagtataagtttagttctgctaccaccgatgta |
623 |
Q |
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| T |
34547556 |
aaacatctatttatctcttgttaaaaaaaaaatagatgtttgtccgattgatatatattg----taagagtataagtttagttctgctaccaccgatgta |
34547651 |
T |
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| Q |
624 |
atatgttaatactgatgtc |
642 |
Q |
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| T |
34547652 |
atatgttaatacttatgtc |
34547670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 34550425 - 34550479
Alignment:
| Q |
76 |
tcttcctcatagataaccctcttgttgaaggccatctcggcatttgggtagcgag |
130 |
Q |
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| T |
34550425 |
tcttcctcgtagacaaccctcttgttgaaggccatctcaccatttgggtagcgag |
34550479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 8240889 - 8240926
Alignment:
| Q |
333 |
taaattgaatctaattcccttcatgcacctgactacag |
370 |
Q |
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| T |
8240889 |
taaattgaaactaattcccttcatgcacctgactacag |
8240926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 8240999 - 8240955
Alignment:
| Q |
333 |
taaattgaatctaattcccttcatgcacctgactacagccaacaa |
377 |
Q |
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| T |
8240999 |
taaattgaatctaattcccttgatgcacctgacttcagctaacaa |
8240955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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