View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_11 (Length: 615)
Name: NF11932_high_11
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 35816392 - 35816956
Alignment:
| Q |
19 |
caggggcagtcaattccacaataaaagttgtcgatccgagcaaggtaagaattagctaaagcagagttttcacgtactagagtctcaatatctgagatat |
118 |
Q |
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| T |
35816392 |
caggggcagtcaattccacaataaaagttgtcgatccgagcaaggtaagaattagctaaagcagagttttcacgtactagagtctcaatatctgagatat |
35816491 |
T |
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| Q |
119 |
ctatctgctccctggatttcaacatgtcatcaatagagaacggaatgctgcaaaatcaatgcttaaaatggttaatgttgcacacaatatcattatcacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816492 |
ctatctgctccctggatttcaacatgtcatcaatagagaacggaatgctgcaaaatcaatgcttaaaatggttaatgttgcacacaatatcattatcacc |
35816591 |
T |
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| Q |
219 |
ataccgattttcaaaaggatatattatctactacaagcctgtcaaactagtatctactactacatataaaacaaagacccccttatgccactgtcgtgct |
318 |
Q |
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| T |
35816592 |
ataccgattttcaaaaggatatattaactactacaagcctgtcaaactagtatctactactacatataaaacaaagacccccttatgccactgtcgtgct |
35816691 |
T |
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| Q |
319 |
tccaagctctcaatttcctgccatgcgattctaggatcatgggtttacaggattagtcggtctttatctatctgtgttttgagtagcttattttgcaacg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816692 |
tccaagctctcaatttcctgccatgcgattctaggatcatgggtttacaggattagtcggtctttatctatctgtgttttgagtagcttattttgcaacg |
35816791 |
T |
|
| Q |
419 |
agaaaacttgnnnnnnnnnngtcagctttcaaagggttgtattttgaaaattaactgcccaagaaaagagctttcagccaaatgaatgtggttataagct |
518 |
Q |
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| T |
35816792 |
agaaaacttgttttttttttgtcagctttcgaagggttgtattttgaaaattaactgcccaagaaaagagctttcagccaaatgaatgtggttat----- |
35816886 |
T |
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| Q |
519 |
cagtaggttacaagcaacatggcaaattttcccttattatttgtaagtgttacatgctgccacatagaattcttgcgtttc |
599 |
Q |
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| T |
35816887 |
-----------aagcaacatggcaaattttcccttattatttgtaagtgttacatgctgccacatagaattcttgcgtttc |
35816956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 582
Target Start/End: Original strand, 36744489 - 36744519
Alignment:
| Q |
552 |
ttattatttgtaagtgttacatgctgccaca |
582 |
Q |
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| T |
36744489 |
ttattatttgtaagtgttacatgctgccaca |
36744519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 599
Target Start/End: Complemental strand, 23693169 - 23693122
Alignment:
| Q |
552 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttc |
599 |
Q |
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| T |
23693169 |
ttattatttgaaagagttacatggtgccacataggattcttgcgtttc |
23693122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 592
Target Start/End: Complemental strand, 8003947 - 8003907
Alignment:
| Q |
552 |
ttattatttgtaagtgttacatgctgccacatagaattctt |
592 |
Q |
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| T |
8003947 |
ttattatttgaaagagttacatgttgccacatagaattctt |
8003907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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