View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_17 (Length: 556)
Name: NF11932_high_17
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 29248303 - 29248827
Alignment:
| Q |
18 |
cagagaacaatttagtgtcgatgagtcaatcttataacaagggagatggcaagttatcaataccttcaacatacacagatatttgtaatgcaatatcaat |
117 |
Q |
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| T |
29248303 |
cagagaacaatttagtgtcgatgagtcaatcttataacaagggagatggcaagttatcaataccttcaacatacacagatatttgtactgcaatatcaat |
29248402 |
T |
|
| Q |
118 |
ggatgaagggtacagtaatgtagatagtaatgttgtgtctattgctcaagcttacaacaaggcccatgacaattttatgttaagtaaccacttattcaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29248403 |
ggatgaagggtacagtaatgtagatagtaatgttgtgtctattgctcaagcttacaacaaggcccatgacaattttatgttaagtaaccacttattcaat |
29248502 |
T |
|
| Q |
218 |
aaggctggagatggcaccatatcaatgggtcacacttaccatcagaggggtaatgacatgccatttgtttcttgttcttataataaaggagaaagcagta |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29248503 |
aaggctggagatggcaccatatcaatgggtaacacttaccatcagaggggtaatgacatgccatttgtttcttgttcttataataaaggagaaagcagta |
29248602 |
T |
|
| Q |
318 |
ttatatcctttggtggctgcgacgacgacgatgcaaccccatctgacttatttgtttccgactatgggctgtttatgggtcaggcgccttcacatatgtc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29248603 |
ttatatcctttggtggctgcgacgacgacgatgcaaccccatctgacttatttgtttccgactacgggctgtttatgggtcaggcgccttcacatatgtc |
29248702 |
T |
|
| Q |
418 |
acaagttgcaaaagaaagaggtttgattagatcaagctctaaagtacctccaagtacagttcagacgtctgcatctgaaactgaaaatgttcccaagaca |
517 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29248703 |
acaagttgcaaaagaaagaggtttggttagatcaagctctaaagtacctctaagtacaggtcagacgtctgcatctgaaactgaaaatgttcccaagaca |
29248802 |
T |
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| Q |
518 |
aaagaggagatgaaaatgtccaaaa |
542 |
Q |
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||||||||||||||||||||||||| |
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| T |
29248803 |
aaagaggagatgaaaatgtccaaaa |
29248827 |
T |
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