View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_19 (Length: 514)
Name: NF11932_high_19
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 44387421 - 44387101
Alignment:
| Q |
1 |
ttggtgactagttccatggttatgtgactcattatcatgaacaggagacacaatcataatcggaaagggcctggaaccataatgtttatacctatcaaac |
100 |
Q |
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| T |
44387421 |
ttggtgactagttccatggttatgtgactcattatcatgaacaggagacacaatcataatcggaaagggcctggaaccataatgtttatacctatcaaac |
44387322 |
T |
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| Q |
101 |
ctttgtgtattttccttcattcgaccatattcataagcaacaaaatcttcatgtgacgtatgcatatgatgaatatcctcctcaaatggtgcttgagttg |
200 |
Q |
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| T |
44387321 |
ctttgtgtattttccttcattcgaccatattcataagcaacaaaatcttcatgtgacatatgcatatgatgaatatcctcctcaaatggtgcttgagttg |
44387222 |
T |
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| Q |
201 |
cattcttatcaaactcaactcttgacttccgttgattcttcatgttctttctatcatcaacatagtgttttcaatggattgattcatcactcgattccaa |
300 |
Q |
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| T |
44387221 |
cattcttatcaaactcaactcttgacttccgttgattcttcatgttctttctatcatcaacatagtgtttacaatggattgattcatcactcgattccaa |
44387122 |
T |
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| Q |
301 |
gctaaaatcaatgctacttag |
321 |
Q |
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||||||||||||||||||||| |
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| T |
44387121 |
gctaaaatcaatgctacttag |
44387101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 367 - 514
Target Start/End: Complemental strand, 44387052 - 44386905
Alignment:
| Q |
367 |
gcagtgtaagtgatccaaatcagaatcatcagcagaaaattccaagccaagacaagaatgatcaaaaattacaaactcttgttccacatattgatcaagg |
466 |
Q |
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| T |
44387052 |
gcagtgtaagtgatccaaatcagaatcatcagcagaaaattccaagccaagacaagaatgatcaaaaattacaaactcttgttccacgtattgatcaagg |
44386953 |
T |
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| Q |
467 |
gaatttcctagattcaaaagagattccaagtatgtatcaaaggatgta |
514 |
Q |
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| T |
44386952 |
gaatttcctagcttcaaaagagattccaagtatgtatcaaaggatgta |
44386905 |
T |
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