View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_20 (Length: 495)
Name: NF11932_high_20
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 115 - 486
Target Start/End: Original strand, 35056656 - 35057019
Alignment:
| Q |
115 |
cccgtttgcttgaagaacgtccgggtctaaaaaagggaatggtgtgcggtctcgctttcttgcgatccaagataccaaatcataaactgaaacttggtta |
214 |
Q |
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| T |
35056656 |
cccgtttgcttgaagaacttccgggtctaaaaaagggaatggtgtgcggtctcgctttcttgcgatccaagataccaaatcataaactgaaacttggtta |
35056755 |
T |
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| Q |
215 |
aaagaattgcttgcttgtgttgtggtatttgtcaccgacccaatcc-----acttatagtagttgtttttaacttttaatactaacaaatcaaaaatagt |
309 |
Q |
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| T |
35056756 |
aaagaattgcttgcttgtgttgtggtatttgtcaccgacccaatccaatcaacttatagtagttgtttttaacttttaatactaacaaatcaaaaatagt |
35056855 |
T |
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| Q |
310 |
agttttgataaaataataaattattgaacaagttacatgaggacacgtgaggaagaagacaaaataatgtaaatatagaaatagtatagtataactgccc |
409 |
Q |
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| T |
35056856 |
agttttgataaaataataaattattgaacaagttacatgaagacacgtgaggaagaagacaaaataatgtaaatatagaa-----atagtataactgccc |
35056950 |
T |
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| Q |
410 |
tattccccatattgcatctttgtgtgtgctggtgccgccattcattcattctcaaaacaaccagcgcccctctgtgc |
486 |
Q |
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| T |
35056951 |
tattccccatattgcatctt----tgtgctggtgccgc----cattcattcttaaaacaaccagcgcccctctgtgc |
35057019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35056512 - 35056557
Alignment:
| Q |
1 |
cattgactgttttataaattttaattgaaatgagtaaaatcctcag |
46 |
Q |
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| T |
35056512 |
cattgactgttttataaattttaattgaaatgagtaaaatactcag |
35056557 |
T |
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