View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_high_22 (Length: 474)

Name: NF11932_high_22
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_high_22
NF11932_high_22
[»] chr3 (6 HSPs)
chr3 (1-169)||(30911887-30912055)
chr3 (1-135)||(55211834-55211968)
chr3 (1-135)||(36326368-36326492)
chr3 (1-81)||(32414656-32414736)
chr3 (111-169)||(18319371-18319429)
chr3 (89-135)||(32414502-32414548)
[»] chr7 (2 HSPs)
chr7 (1-136)||(42513212-42513347)
chr7 (1-135)||(38572361-38572495)
[»] chr1 (5 HSPs)
chr1 (7-136)||(13087572-13087700)
chr1 (3-135)||(18584038-18584170)
chr1 (85-172)||(24618574-24618663)
chr1 (54-134)||(23405689-23405769)
chr1 (47-124)||(21076171-21076248)
[»] chr5 (3 HSPs)
chr5 (1-136)||(8123393-8123528)
chr5 (1-135)||(671328-671462)
chr5 (54-135)||(41709389-41709470)
[»] chr4 (3 HSPs)
chr4 (54-216)||(36053697-36053859)
chr4 (1-100)||(20441069-20441167)
chr4 (54-137)||(36050517-36050600)
[»] chr6 (6 HSPs)
chr6 (4-137)||(13886452-13886585)
chr6 (1-124)||(7426463-7426586)
chr6 (1-124)||(7415516-7415639)
chr6 (1-128)||(4834590-4834719)
chr6 (8-124)||(33242726-33242842)
chr6 (1-124)||(7422524-7422647)
[»] chr2 (2 HSPs)
chr2 (1-92)||(31211598-31211689)
chr2 (47-179)||(4472658-4472790)
[»] chr8 (3 HSPs)
chr8 (54-176)||(44765088-44765210)
chr8 (83-179)||(24249006-24249102)
chr8 (54-135)||(44761823-44761904)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 30912055 - 30911887
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||  || ||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  30912055 agtgcaccctaacatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagtcataataacttctagaactaaccgagtca 30911956  T
Q  101 tcacattaatgctccttattctaaatattctatcattaccgcccccttcaagaccaaccttgtcctcaa 169  Q
    |||||||| | ||| ||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||    
T  30911955 tcacattagtactcattattctaagtatcctatcattaccgaccccttcaagatcaaccttgtcctcaa 30911887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 55211834 - 55211968
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| ||||||||| |||||| | ||||||  |||||||||| |||||     
T  55211834 agtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtcgtgataacttttagaactagccgagtcg 55211933  T
Q  101 tcacattaatgctccttattctaaatattctatca 135  Q
     ||||||| ||||||||||||||||||| ||||||    
T  55211934 ccacattagtgctccttattctaaatatcctatca 55211968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 36326492 - 36326368
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||          || |||||||||||||||| |||||||||| |||||||    
T  36326492 agtgcaccctaacatactcaatatcatcccctaacaagataccttctagatt----------aatgtgagtcataataacttctagaactagatgagtca 36326403  T
Q  101 tcacattaatgctccttattctaaatattctatca 135  Q
     ||||||||| ||| ||||||||||||| ||||||    
T  36326402 ccacattaatactcattattctaaatatgctatca 36326368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32414736 - 32414656
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataact 81  Q
    |||||||| ||||||||| ||||||||||||  |||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  32414736 agtgcaccataacatacttaatattatccccagacaatataccttctagatccttataggttaaggtgagtcataataact 32414656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 18319429 - 18319371
Alignment:
Q  111 gctccttattctaaatattctatcattaccgcccccttcaagaccaaccttgtcctcaa 169  Q
    |||||||||| ||| ||| |||||| ||||| ||||||||||| |||||||||||||||    
T  18319429 gctccttattttaagtatcctatcactaccgaccccttcaagatcaaccttgtcctcaa 18319371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 32414548 - 32414502
Alignment:
Q  89 ctagctgagtcatcacattaatgctccttattctaaatattctatca 135  Q
    |||||||||||| |||||||||| |||||||||||| ||| ||||||    
T  32414548 ctagctgagtcaccacattaatgttccttattctaactatcctatca 32414502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42513212 - 42513347
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  42513212 agtgtaccctaacatactcaatattatcccctaacaatagaccttctagatccttctagattaaggtgagtcataataacttctagaactagatgagtca 42513311  T
Q  101 tcacattaatgctccttattctaaatattctatcat 136  Q
     ||||||| ||||||||||||||||||| |||||||    
T  42513312 ccacattagtgctccttattctaaatatcctatcat 42513347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 38572361 - 38572495
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  38572361 agtgtaccctaacttactcaatattatcccctaacaagataccttctagatccttttagattaaggtgagtcataataacttctagaactagctgagtca 38572460  T
Q  101 tcacattaatgctccttattctaaatattctatca 135  Q
     ||||||| | ||| ||||||||||||| ||||||    
T  38572461 gcacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 13087700 - 13087572
Alignment:
Q  7 ccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtcatcacat 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  13087700 ccctaacatactcgatattatcccctaacaatataccttctagat-cgtctagattaaggtgagtcataataacttctagaactagccgagtcaccacat 13087602  T
Q  107 taatgctccttattctaaatattctatcat 136  Q
    |||||||||||||||| ||||| |||||||    
T  13087601 taatgctccttattctgaatatcctatcat 13087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 18584038 - 18584170
Alignment:
Q  3 tgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtcatc 102  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||  || |||||||| || || |    
T  18584038 tgcaccctaacatactcaatattatcccctaataatataccttttagatccttctagattaaggtgagtcataataacttttataactagctaagccacc 18584137  T
Q  103 acattaatgctccttattctaaatattctatca 135  Q
    |||||||||||||||||||||||||| ||||||    
T  18584138 acattaatgctccttattctaaatatcctatca 18584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 24618574 - 24618663
Alignment:
Q  85 agaactagctgagtcatcacattaatgctccttattctaaatattctat--cattaccgcccccttcaagaccaaccttgtcctcaagat 172  Q
    |||||||| ||||||| || ||| || ||||||||| ||||||  ||||  |||||||| ||||||||||| |||||||||||| |||||    
T  24618574 agaactagttgagtcaccaaatttatactccttattttaaataccctatatcattaccgaccccttcaagatcaaccttgtcctgaagat 24618663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 23405689 - 23405769
Alignment:
Q  54 ttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatc 134  Q
    |||||||||||| ||||||||| || || ||||||||||  ||||||||| ||| ||  ||||||||||| |||| |||||    
T  23405689 ttctagattaagatgagtcatactaccttctagaactaggggagtcatcatatttatattccttattctagatatcctatc 23405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 21076171 - 21076248
Alignment:
Q  47 tagattcttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaa 124  Q
    ||||| ||| || |||||||||| ||||| |  || |||||||||| ||||||| ||||||| | |||||||||||||    
T  21076171 tagatccttttaaattaaggtgaatcatatttgcttctagaactaggtgagtcaccacattagtactccttattctaa 21076248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 8123528 - 8123393
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  8123528 agtgtaccctaacatactcaatattatcccctaacaatagatcttctagatccttctagattaaggtcagtcataataacttctagaactagatgagtca 8123429  T
Q  101 tcacattaatgctccttattctaaatattctatcat 136  Q
     || |||| ||||||||||||||||||| |||||||    
T  8123428 ccagattagtgctccttattctaaatatcctatcat 8123393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 671462 - 671328
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||  |||||| |||| ||||||    
T  671462 agtgtaccctaacctactcaatattatcccctaacaatatatcttatggatccttctagattaaggtgagtcataataacatctagaattagccgagtca 671363  T
Q  101 tcacattaatgctccttattctaaatattctatca 135  Q
      | |||||||||||||||||||||||| ||||||    
T  671362 ctatattaatgctccttattctaaatatcctatca 671328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 41709470 - 41709389
Alignment:
Q  54 ttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatca 135  Q
    |||||||||||| ||||||||| || || ||||||||||  |||||| |||||| ||  ||||||||||| |||| ||||||    
T  41709470 ttctagattaagatgagtcatactaccttctagaactagaggagtcaccacatttatattccttattctagatatcctatca 41709389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 36053859 - 36053697
Alignment:
Q  54 ttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatcattaccgcccccttcaaga 153  Q
    |||||||||||| ||||||||| || || ||||||||||  |||||| ||||||| | ||| ||||||||||||| |||||||||||| |||||||||||    
T  36053859 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatcattaccgaccccttcaaga 36053760  T
Q  154 ccaaccttgtcctcaagattgtaaaatcctgtttctaccataaacttccctggatcccactgt 216  Q
     |||||||||||||||| ||||| ||||||| ||||||  |||||||||||||||||||||||    
T  36053759 tcaaccttgtcctcaaggttgtagaatcctgcttctacgctaaacttccctggatcccactgt 36053697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 20441069 - 20441167
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||||||||| |||| |||||||||||||| ||||||||||| || ||||| |||||| ||||||||||||||||| |||| ||||||||||||| ||||    
T  20441069 agtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaattaaggtgagtcataacaacttctagaactagctgcgtca 20441167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 36050600 - 36050517
Alignment:
Q  54 ttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatcatt 137  Q
    |||||||||||| ||||||||| || || ||||||||||  |||||| ||||||| | ||| ||||||||||||| ||||||||    
T  36050600 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatcatt 36050517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 13886585 - 13886452
Alignment:
Q  4 gcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtcatca 103  Q
    ||||||||||||||| ||||||| ||| |||||||||||||| |||||  |||||||||||||||||||||||||| |  |||||||||| |||||| ||    
T  13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcataataatttatagaactagcagagtcacca 13886486  T
Q  104 cattaatgctccttattctaaatattctatcatt 137  Q
    ||||| ||||||||||||||| ||| ||||||||    
T  13886485 cattagtgctccttattctaactatcctatcatt 13886452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 7426586 - 7426463
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||||||| |||||||||||||||||||||||||||| ||| ||||||||| || |||||||||| ||||| ||||||  | ||||||||||||||||||    
T  7426586 agtgcaccataacatactcaatattatcccctaacaagataacttctagatcctactagattaagatgagttataatattttctagaactagctgagtca 7426487  T
Q  101 tcacattaatgctccttattctaa 124  Q
     ||||||||| ||| |||||||||    
T  7426486 ccacattaatactcattattctaa 7426463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 7415639 - 7415516
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||||||| |||||||||||||||||||||||||||| |||  |||||||| |||||| |||||| ||||||||||||  | ||||||||||||||||||    
T  7415639 agtgcaccataacatactcaatattatcccctaacaagataatttctagatccttctaaattaagatgagtcataatattttctagaactagctgagtca 7415540  T
Q  101 tcacattaatgctccttattctaa 124  Q
     ||||||| | ||| |||||||||    
T  7415539 ccacattagtactcattattctaa 7415516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4834719 - 4834590
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatatac--cttctagattcttctagattaaggtgagtcataataactcctagaactagctgagt 98  Q
    |||||||||||||||||||||||||||||||||| || ||||  ||| ||||| ||||||||||||||||||||||||||||| ||||||||  ||||||    
T  4834719 agtgcaccctaacatactcaatattatcccctaataagatactccttttagatccttctagattaaggtgagtcataataacttctagaacttactgagt 4834620  T
Q  99 catcacattaatgctccttattctaaatat 128  Q
    || ||||||  |  || |||||||||||||    
T  4834619 caccacattcgtagtcattattctaaatat 4834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 33242842 - 33242726
Alignment:
Q  8 cctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtcatcacatt 107  Q
    |||||||||||||||||||||||||||||||||  |||||| || ||| |||| |||| ||| |||||| |||| |||||||||||||||||| || |||    
T  33242842 cctaacatactcaatattatcccctaacaatatgtcttctaaatccttatagactaagatgactcataacaacttctagaactagctgagtcaccatatt 33242743  T
Q  108 aatgctccttattctaa 124  Q
    | |||||||||||||||    
T  33242742 agtgctccttattctaa 33242726  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 7422647 - 7422524
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactagctgagtca 100  Q
    |||||||| ||||||||||||| |||||||||||||| ||| ||||||||| |||||| |||||| ||| ||||||||  | |||||||||||| |||||    
T  7422647 agtgcaccataacatactcaatgttatcccctaacaagataacttctagatccttctaaattaagatgattcataatattttctagaactagctaagtca 7422548  T
Q  101 tcacattaatgctccttattctaa 124  Q
     ||||||| | ||| |||||||||    
T  7422547 ccacattagtactcattattctaa 7422524  T

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Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 31211689 - 31211598
Alignment:
Q  1 agtgcaccctaacatactcaatattatcccctaacaatataccttctagattcttctagattaaggtgagtcataataactcctagaactag 92  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||||| |||| ||||||||||    
T  31211689 agtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttctagattaaagtgagtcataacaacttctagaactag 31211598  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 4472790 - 4472658
Alignment:
Q  47 tagattcttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatcattaccgccccc 146  Q
    ||||| ||||||||||||||||| ||||  |  || |||||||||| ||||||| || || ||||||||||||| ||| ||| ||||||||| |   |||    
T  4472790 tagatccttctagattaaggtgaatcatctttgcttctagaactaggtgagtcaccatataaatgctccttattttaactatcctatcattatctatccc 4472691  T
Q  147 ttcaagaccaaccttgtcctcaagattgtaaaa 179  Q
    ||||||| |||||||||||||||| ||||||||    
T  4472690 ttcaagatcaaccttgtcctcaaggttgtaaaa 4472658  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 44765210 - 44765088
Alignment:
Q  54 ttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatcattaccgcccccttcaaga 153  Q
    |||||||||||| ||||||||| || || ||||||||||  |||||| |||||| ||  ||||||||||| |||| |||||||||||  |||||||||||    
T  44765210 ttctagattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatcattaccaaccccttcaaga 44765111  T
Q  154 ccaaccttgtcctcaagattgta 176  Q
     |||||||||||||||| |||||    
T  44765110 tcaaccttgtcctcaaggttgta 44765088  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 24249102 - 24249006
Alignment:
Q  83 ctagaactagctgagtcatcacattaatgctccttattctaaatattctatcattaccgcccccttcaagaccaaccttgtcctcaagattgtaaaa 179  Q
    ||||||||||  || ||| ||||| | ||||||||||| | ||||| ||||||||| |  ||||||||| | |||| ||||||||||| ||||||||    
T  24249102 ctagaactagacgaatcaccacatgagtgctccttattttgaatatcctatcattatctaccccttcaatatcaacgttgtcctcaaggttgtaaaa 24249006  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 44761904 - 44761823
Alignment:
Q  54 ttctagattaaggtgagtcataataactcctagaactagctgagtcatcacattaatgctccttattctaaatattctatca 135  Q
    |||||||||||| ||||||| | || || ||||||||||  |||||| |||||| ||  ||||||||||| |||| ||||||    
T  44761904 ttctagattaagatgagtcaaactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 44761823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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