View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_high_27 (Length: 449)

Name: NF11932_high_27
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_high_27
NF11932_high_27
[»] chr1 (12 HSPs)
chr1 (4-436)||(48584741-48585173)
chr1 (30-436)||(48660966-48661369)
chr1 (30-433)||(48666561-48666964)
chr1 (67-436)||(48655988-48656357)
chr1 (249-436)||(48618752-48618939)
chr1 (238-436)||(48652516-48652714)
chr1 (238-436)||(11546627-11546825)
chr1 (219-436)||(48628321-48628538)
chr1 (67-198)||(11546889-11547020)
chr1 (67-198)||(48618546-48618677)
chr1 (135-198)||(48652778-48652841)
chr1 (9-113)||(48628606-48628710)
[»] chr3 (1 HSPs)
chr3 (238-436)||(19666097-19666295)
[»] chr8 (3 HSPs)
chr8 (219-437)||(27227550-27227768)
chr8 (238-436)||(27223360-27223558)
chr8 (135-198)||(27227825-27227888)


Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 4 - 436
Target Start/End: Complemental strand, 48585173 - 48584741
Alignment:
4 aatgcaaaaggagcaagcaacattcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaagccaaaagattccgtag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48585173 aatgcaaaaggagcaagcaacattcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaagccaaaagattccgtag 48585074  T
104 tttacgtctctttcgggactctagtaaactatcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtggtcatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48585073 tttacgtctctttcgggactctagtaaactatcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtggtcatt 48584974  T
204 aagcaatcctggtgttttgcctgatgattttttggaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatcct 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
48584973 aagcaatcctggtgttttgcctgatgattttttggaggaaacaaatgagagagggaaagtggtggagtggagtccacaagtagatgtacttgctcatcct 48584874  T
304 tcagttgcatgtttcataacacattgtggttggaattcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaac 403  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48584873 tcagttgcatgtttcataacacattgtggttggaattcatcaattgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaac 48584774  T
404 ttacaaatgcaaaattcttggttgatgtttttg 436  Q
    |||||||||||||||||||||||||||||||||    
48584773 ttacaaatgcaaaattcttggttgatgtttttg 48584741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 48661369 - 48660966
Alignment:
30 tggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaagccaaaagattccgtagtttacgtctctttcgggactctagta 129  Q
    |||||||||| | ||||| |||||||||  ||  || |||||||||||| ||||||||||||||| ||| ||||||||  | ||||| |||||| | ||     
48661369 tggtgatttcactaagagtaatgatgattctactattatagagtggctaaacacaaagccaaaaggttctgtagtttatatttcttttgggactattgtg 48661270  T
130 aactatcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtggtcattaagcaatcctggtgttttgcctgatg 229  Q
    ||  || ||||||||||| | || ||||||| ||| |||||||||||||||||||||||||||||||||  |||||   | | ||   |||| || ||||    
48661269 aatcatactcaagaacaagttaacgaaattgcatatgggttattgaattctcaagtctcgtttttgtgggtattaaaacaacatg---ttttccccgatg 48661173  T
230 attttttggaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattg 329  Q
      || ||||||||||||| || |||||| ||||| ||||| ||||||||||||| | |||||||||||||| ||||||| |||||||||||||| |||||    
48661172 gcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacccattg 48661073  T
330 tggttggaattcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgat 429  Q
    ||||||||||||||| || |||||  || |||||||||||||  |||||||||||||  ||   ||||||||||||||||| ||||| |||||||| |||    
48661072 tggttggaattcatcgatggaagcaattactttaggagttccaatgttgacatttcctgcatttggtgaccaacttacaaacgcaaagttcttggtcgat 48660973  T
430 gtttttg 436  Q
    |||||||    
48660972 gtttttg 48660966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 48666964 - 48666561
Alignment:
30 tggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaagccaaaagattccgtagtttacgtctctttcgggactctagta 129  Q
    |||||||||| | |||||||||||||||  ||| || |||||||||||| ||||||||||||||| ||| || |||||  | ||||| || ||| | ||     
48666964 tggtgatttcactaagagcaatgatgattgtaatattatagagtggctaaacacaaagccaaaaggttctgtggtttatatttcttttggtactgttgtg 48666865  T
130 aactatcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtggtcatt-aagcaatcctggtgttttgcctgat 228  Q
     |   ||||||||||| | || ||||||| | ||| ||||||||| ||||||||||| | ||||||||| ||   || ||| | || || ||||||  ||    
48666864 tatcttcctcaagaactagtgtatgaaatagcatatgggttattggattctcaagtcacatttttgtgggcaaagaaacaa-catgatgatttgccgtat 48666766  T
229 gattttttggaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacatt 328  Q
    |  || ||||||||||||| || |||||| ||||| ||||| ||||||||||||| | ||||| | |||||||| ||||| |||||||||||||||||||    
48666765 ggattcttggaggaaacaagtgggagaggaaaagtagtgaattggagtccacaagaacaagtattggctcatccatcagtggcatgtttcataacacatt 48666666  T
329 gtggttggaattcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttga 428  Q
    |||||||||| |||||||| ||||| ||| |||||||||||||  |||||||||||||| ||   ||||||||||||||||| ||||| |||||||||||    
48666665 gtggttggaactcatcaatggaagcacttactttaggagttccaatgttgacatttccaacatttggtgaccaacttacaaacgcaaagttcttggttga 48666566  T
429 tgttt 433  Q
    |||||    
48666565 tgttt 48666561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 67 - 436
Target Start/End: Complemental strand, 48656357 - 48655988
Alignment:
67 atagagtggctagacacaaagccaaaagattccgtagtttacgtctctttcgggactctagta-aactatcctcaagaacaaatgaatgaaattgtatac 165  Q
    |||||||||||| || |||||||||||| ||| || ||||| || || || |||||| | ||  |||| ||||| ||||||| |||||||||||| |||     
48656357 atagagtggctaaactcaaagccaaaaggttctgtggtttatgtttcctttgggactattgtgcaact-tcctccagaacaagtgaatgaaattgcatat 48656259  T
166 gggttattgaattctcaagtctcgtttttgtggtcattaagcaatcctggtgttttgcctgatgattttttggaggaaacaaatgagagagggaaagtgg 265  Q
    ||||||||||||||||||||| | ||||| ||| ||   |  || | || || ||||||| |||  |||||||||||||||| || |||||| ||||| |    
48656258 gggttattgaattctcaagtcacatttttatgggcaaagaaaaagcatgatgatttgcctcatggatttttggaggaaacaagtgggagaggaaaagtag 48656159  T
266 tgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattgtggttggaattcatcaatcgaagctctttctttagg 365  Q
    |||| ||||||||||||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||| | ||| ||| |||    
48656158 tgaaatggagtccacaagaacaagtacttgctcatccttcagtggcatgtttcataacccattgtggttggaattcaacgattgaatcacttgcttcagg 48656059  T
366 agttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgatgtttttg 436  Q
    |||||| ||||| |||||||||  |   |||||||||| |||||||||||| |||||||| ||||||||||    
48656058 agttccagtgttaacatttccagtatttggtgaccaacctacaaatgcaaagttcttggtagatgtttttg 48655988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 249 - 436
Target Start/End: Original strand, 48618752 - 48618939
Alignment:
249 tgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattgtggttggaattcatcaatc 348  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||     
48618752 tgagagaggaaaagtggtgaactggagtccacaagaagaagtacttgctcatccttcagtggcatgcttcataacacattgtggttggaattcatcaatg 48618851  T
349 gaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgatgtttttg 436  Q
    ||||| |||||||| ||||||||  |||||||||||||| || | ||||| ||| | ||||||||||| |||||||| ||||||||||    
48618852 gaagcactttctttgggagttccaatgttgacatttccagcatggggtgatcaagtcacaaatgcaaagttcttggtagatgtttttg 48618939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 48652714 - 48652516
Alignment:
238 gaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattgtggttgga 337  Q
    |||||||||| ||||||||| ||||| || || ||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||    
48652714 gaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagtacttgctcatccttcagtggcatgcttcataacacattgtggttgga 48652615  T
338 attcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgatgtttttg 436  Q
    |||||||||| ||||| |||||||| ||||||||  |||||||||||||| || | ||||| ||| | |||||||||||||||||||| ||||||||||    
48652614 attcatcaatggaagcactttctttgggagttccaatgttgacatttccagcatggggtgatcaagtcacaaatgcaaaattcttggtagatgtttttg 48652516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 11546825 - 11546627
Alignment:
238 gaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattgtggttgga 337  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||| | |||||||||||| | | ||||||||||||||||||||||||||    
11546825 gaggaaacaaatgagagaggaaaagttgtgaaatggagtccacaagaagaagtattggctcatccttcattggtatgtttcataacacattgtggttgga 11546726  T
338 attcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgatgtttttg 436  Q
    |||| ||||| || || |||  |||||| |||||  |||||||||||||| || | ||||| ||| | ||||||||||| || ||||| ||||||||||    
11546725 attcttcaatagaggcacttagtttaggtgttccaatgttgacatttccagcatggggtgatcaagtcacaaatgcaaagtttttggtagatgtttttg 11546627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 436
Target Start/End: Complemental strand, 48628538 - 48628321
Alignment:
219 tttgcctgatgattttttggaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttc 318  Q
    |||||||||||  || ||||||||||||| |||| |||| |||||||||||||||||||||||||  |||||||||| ||||||||| || |||||||||    
48628538 tttgcctgatgggttcttggaggaaacaagtgagtgaggaaaagtggtgaagtggagtccacaagaggaagtacttgatcatccttcggtggcatgtttc 48628439  T
319 ataacacattgtggttggaattcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaat 418  Q
     | ||||||||||| ||||||||| | || |||||  || ||| ||||||||| |||||| |||||||| ||   |||||||| |||||||||||||| |    
48628438 gtgacacattgtggctggaattcaacgatggaagcaattgcttcaggagttccagtgttggcatttccagcatttggtgaccaccttacaaatgcaaagt 48628339  T
419 tcttggttgatgtttttg 436  Q
    | ||| | ||||||||||    
48628338 ttttgatagatgtttttg 48628321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 11547020 - 11546889
Alignment:
67 atagagtggctagacacaaagccaaaagattccgtagtttacgtctctttcgggactctagtaaactatcctcaagaacaaatgaatgaaattgtatacg 166  Q
    |||||||||||| ||||||||||||||||||| || |||||  | ||||| |||||| | ||  ||  ||| ||||||||| |||||||||| | ||| |    
11547020 atagagtggctaaacacaaagccaaaagattctgtggtttatatttcttttgggactattgtgtaccttccacaagaacaagtgaatgaaatagcatatg 11546921  T
167 ggttattgaattctcaagtctcgtttttgtgg 198  Q
    |||||||  |||||||||| || |||||||||    
11546920 ggttattagattctcaagtatcatttttgtgg 11546889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 48618546 - 48618677
Alignment:
67 atagagtggctagacacaaagccaaaagattccgtagtttacgtctctttcgggactctagtaaactatcctcaagaacaaatgaatgaaattgtatacg 166  Q
    ||||||||||||  |||||||||||||| ||| || |||||  | ||||| ||| || | ||  ||  ||| ||||||||| |||||||||||| ||| |    
48618546 atagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctattgtgtacattccacaagaacaagtgaatgaaattgcatatg 48618645  T
167 ggttattgaattctcaagtctcgtttttgtgg 198  Q
    |||||||| |||||||||| ||||||||||||    
48618646 ggttattggattctcaagtatcgtttttgtgg 48618677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 48652841 - 48652778
Alignment:
135 tcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtgg 198  Q
    ||||||||||||| |||||||||| | ||| ||||||||| |||||||||| ||||||||||||    
48652841 tcctcaagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgg 48652778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 48628710 - 48628606
Alignment:
9 aaaaggagcaagcaacattcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaagccaaaagattccgtagtttac 108  Q
    ||||| ||||||||| ||||  |||||||| |  |||||| ||||||||  ||  || |||||||||||| |||||||||||| || ||| || ||||||    
48628710 aaaagcagcaagcaatattcgaggtgattttgttaagagcgatgatgattgtagtattatagagtggctacacacaaagccaacaggttctgttgtttac 48628611  T
109 gtctc 113  Q
     ||||    
48628610 atctc 48628606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 238 - 436
Target Start/End: Original strand, 19666097 - 19666295
Alignment:
238 gaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattgtggttgga 337  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
19666097 gaggaaacaaatgagagaggaaaagtggtgaattggagtccacaagaagaagtacttgctcatccttcagtagcatgtttcataacacattgtggttgga 19666196  T
338 attcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgatgtttttg 436  Q
    |||| || || ||||| |||  ||||||||||||  |||||||||||||| || | ||||| ||| | ||||||||||| || ||||||||||||||||    
19666197 attcgtcgatggaagcgcttagtttaggagttccaatgttgacatttccagcatggggtgatcaagtcacaaatgcaaagtttttggttgatgtttttg 19666295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 219 - 437
Target Start/End: Complemental strand, 27227768 - 27227550
Alignment:
219 tttgcctgatgattttttggaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttc 318  Q
    |||||||||||  || ||||||||||| | || || ||| ||||| | ||||||| ||||||||| | ||||||| |||||||||||||| |||||||||    
27227768 tttgcctgatgggttcttggaggaaactagtgggaaaggaaaagttgcgaagtggtgtccacaagaacaagtactagctcatccttcagtggcatgtttc 27227669  T
319 ataacacattgtggttggaattcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaat 418  Q
    || ||||||||||||||||| || || || || || ||| |||||||||| ||  |||| ||||||||| || | ||||| ||| ||||||||||||| |    
27227668 atgacacattgtggttggaactcgtcgatggaggcacttactttaggagtgccgatgttaacatttccagcatggggtgatcaagttacaaatgcaaagt 27227569  T
419 tcttggttgatgtttttga 437  Q
    ||||||| |||||||||||    
27227568 tcttggtagatgtttttga 27227550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 27223558 - 27223360
Alignment:
238 gaggaaacaaatgagagagggaaagtggtgaagtggagtccacaagtagaagtacttgctcatccttcagttgcatgtttcataacacattgtggttgga 337  Q
    |||||||| | || |||||| ||||||||||||||| ||||||||| | ||||||| ||||||||||| || ||||| ||  ||||||||||||||||||    
27223558 gaggaaactagtgggagaggaaaagtggtgaagtggtgtccacaagaacaagtactagctcatccttcggtggcatgctttgtaacacattgtggttgga 27223459  T
338 attcatcaatcgaagctctttctttaggagttcctgtgttgacatttccatcaagaggtgaccaacttacaaatgcaaaattcttggttgatgtttttg 436  Q
    | || || || ||||| ||| |||||||||| ||  |||| ||||||||| || | || || ||| | ||||||||||| || ||||| ||||||||||    
27223458 actcgtcgatggaagcacttactttaggagtgccgatgttaacatttccagcatggggcgatcaagtcacaaatgcaaagtttttggtagatgtttttg 27223360  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 27227888 - 27227825
Alignment:
135 tcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtgg 198  Q
    ||||||||||||| ||||||||||||  || || |||||| ||||||||||||| |||||||||    
27227888 tcctcaagaacaagtgaatgaaattgcctatggattattggattctcaagtctcctttttgtgg 27227825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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