View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_high_28 (Length: 446)
Name: NF11932_high_28
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 47285765 - 47286183
Alignment:
| Q |
19 |
aaatagggcggagaaaatgcctctaagcttaaatcggttggaaattcaactccggtaaaattgtaatttacatgtggattactaccacctactaaaactc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285765 |
aaatagggcggagaaaatgcctctaagcttaaatcggttggaaattcaactccggtaaaattgtaatttacatgtggattactaccacctactaaaactc |
47285864 |
T |
|
| Q |
119 |
ttccatctcttaacacaattgcagatgaatggtagagtctaggtctagaagccggtgacattacactaaaccgtttatctgatttggtttctgatgaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47285865 |
ttccatctcttaacacaattgcagatgaatggtagagtctaggtctagaagctggtgacattacactaaatcgtttatctgatttggtttctgatgaacg |
47285964 |
T |
|
| Q |
219 |
gaaaattaccggtgttaaaacaggttgacatccgttttcccatccagctgtacctgatccagcgccgttaattataataacatcgccgttaggtagaatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285965 |
gaaaattaccggtgttaaaacaggttgacgtccgttttcccatccagctgtacctgatccagcgccgttaattataataacatcgccgttaggtagaatt |
47286064 |
T |
|
| Q |
319 |
aacatgtctcccattactcttgccattggcatattctcaataatccaactaggattcgaatccgttactttgagaaatccacatgttttaagtgctggca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286065 |
aacatgtctcccattactcttgccattggcatattctcaataatccaactaggattcgaatccgttactttgagaaatccacatgttttaagtgctggca |
47286164 |
T |
|
| Q |
419 |
tgaagttctttccctttgc |
437 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47286165 |
tgaagttctttccctttgc |
47286183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University