View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_30 (Length: 440)
Name: NF11932_high_30
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 47068284 - 47067872
Alignment:
| Q |
17 |
atcttgtaaacgtaatggatggatattaaaatcgctgaacacaaaagcgcagtaaaaattgatgtaacaattataatatgcaccactgctttggtacttg |
116 |
Q |
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| T |
47068284 |
atcttgtaaacgtaatggatggatattaaaatcgctgaacacaaaagcgcagtaaaaattgatgtaacaatgataatatgcaccactgctttggtacttg |
47068185 |
T |
|
| Q |
117 |
taattagaggtggctgtggataaaaaagtgtatcattccccttccggttttcgatgctgccatttcccacctttatgtatgctgctgcaggcgagccgta |
216 |
Q |
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| T |
47068184 |
taattagaggtggctgtggataaaaaagtgtatcattccccttccagttttcgatgctgccatttcccacctttatgtatgctgctgcaggcgagtcgtc |
47068085 |
T |
|
| Q |
217 |
ggcttcatgtgtccttgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47068084 |
ggcttcatgtgtccttgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaa |
47067985 |
T |
|
| Q |
317 |
gcaaatgagcattctttttccgataatatatcctcagtctcaaaataaggatggtctttccatacaatattgttcattgggaccatatcataaaaggcca |
416 |
Q |
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| T |
47067984 |
gcaaatgagcattctttttccgataatatatcctcagtctcaaaataaggatggtctttccatacaatattgttcattgggaccatatcataaaaggcca |
47067885 |
T |
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| Q |
417 |
aaccatctttctc |
429 |
Q |
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| T |
47067884 |
aaccatctttctc |
47067872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 422
Target Start/End: Original strand, 47076244 - 47076448
Alignment:
| Q |
218 |
gcttcatgtgtccttgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcatacagtgcagcccaacagttgcaatcaaccaaacaag |
317 |
Q |
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||||||||||| | | |||||||||||||||| | |||||||||||||||||| |||| ||||| | |||||||||||| |||||||||| |||||||| |
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| T |
47076244 |
gcttcatgtgttcgtttgacatatctcaaaggaagtccttgtttcttgcatcttccttcttcataaattgcagcccaacaattgcaatcaatcaaacaag |
47076343 |
T |
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| Q |
318 |
caaatgagcattctttttccgataatatatcctcagtctcaaaataaggatggtctttccatacaatattgttcattgggaccatatcataaaaggccaa |
417 |
Q |
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||||| ||||||||| ||| ||| | ||||| ||| | |||||||||||||| ||||| |||| |||| ||||||||||||| | ||||||||||| |
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| T |
47076344 |
caaataagcattcttcttctgatgacatatcatcatctttgaaataaggatggtcattccaaacaagattggtcattgggaccatgttataaaaggccac |
47076443 |
T |
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| Q |
418 |
accat |
422 |
Q |
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||||| |
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| T |
47076444 |
accat |
47076448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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