View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_high_31 (Length: 433)
Name: NF11932_high_31
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_31 |
 | |
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| [»] scaffold0070 (3 HSPs) |
| | |
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| [»] scaffold0955 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 25384658 - 25384271
Alignment:
| Q |
19 |
tatgcctcaagaaacattggagagtttgcttgttgtttaaagctatttaagaaaatattacttcaatctttatttggatatccatgagtttacaaaactc |
118 |
Q |
| |
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|||||||||||||| |||| ||||||| |||||||||||| ||||| |||| ||||||||||| ||||||| |||||| || ||| || |
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| T |
25384658 |
tatgcctcaagaaaaattgaagagtttacttgttgtttaatgctatctaag-------------aatctttattttgatatccttgagttcactaaaatc |
25384572 |
T |
|
| Q |
119 |
actgtcacacacattgtgctccaactacaagcgctaaaccatgtgttaatcaaattttggtaacacattctttcagagaaaaaataataa----tttgga |
214 |
Q |
| |
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|| || ||||||||||||||||||||||| ||||||||| |||| | || ||| ||| ||||||||||||||| | |||| | ||||| |||| | |
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| T |
25384571 |
acagttacacacattgtgctccaactacatgcgctaaactttgtgctgattaaagttttataacacattctttca-ataaaataaaataaaagttttgta |
25384473 |
T |
|
| Q |
215 |
acacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctctc |
314 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
25384472 |
acacatacattgataaatatgtaaaagaagaagcacatttataatgcacctaaaatagtttttcataagcttctgaatctttcatatatgaaagcatctc |
25384373 |
T |
|
| Q |
315 |
acatgtcaaacgaagcatgcggacgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgtaa |
414 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |
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| T |
25384372 |
atgagtcaaacgaagcatgcggacgcttc---------tcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttagttgattttcataa |
25384282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 47 - 425
Target Start/End: Complemental strand, 25488536 - 25488175
Alignment:
| Q |
47 |
cttgttgtttaaagctatttaagaaaatattacttcaatctttatttggatatccatgagtttacaaaactcactgtcacacacattgtgctccaactac |
146 |
Q |
| |
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||||| |||||| || ||| |||||||||| ||| | |||||||||| ||||||| |||||||| |||||||| |||| ||||||||||||| |
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| T |
25488536 |
cttgtggtttaatgcaattgaagaaaatatcactcccatctttattttgatatcctcgagtttactaaactcacagtcagacacattgtgctc------- |
25488444 |
T |
|
| Q |
147 |
aagcgctaaaccatgtgttaatcaaattttggtaacacattctttcagagaaaaaataataa--tttggaacacatacattgataaatatgtaaaagaag |
244 |
Q |
| |
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| ||| |||| | |||||| ||| |||||||||||||||| | |||||| || || ||| ||||||||||||||||||||||||||||||| |
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| T |
25488443 |
------ttaactttgtgctgatcaaagttttgtaacacattctttca-ataaaaaaaaaaaagttttttaacacatacattgataaatatgtaaaagaag |
25488351 |
T |
|
| Q |
245 |
aagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctctcacatgtcaaacgaagc----atgcggacgc |
340 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||||| |||||||||| |
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|
| T |
25488350 |
aaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatttcacgtgtcaaacgaagcatgcatgcggacgc |
25488251 |
T |
|
| Q |
341 |
ttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgtaagtatctctgct |
425 |
Q |
| |
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||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
25488250 |
ttc---------tcttcatcttaagttctgttatgcgatgaaccgttgcctcatgacttacttgattttcgtaagtatctatgct |
25488175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 214 - 425
Target Start/End: Complemental strand, 25692822 - 25692620
Alignment:
| Q |
214 |
aacacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctct |
313 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
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| T |
25692822 |
aacacatacattgataaacatctaaaagaagaagcacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatct |
25692723 |
T |
|
| Q |
314 |
cacatgtcaaacgaagcatgcggacgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgta |
413 |
Q |
| |
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||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |
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| T |
25692722 |
cacgtgtcaaacgaagcatgcggatgcttc---------tcttcatcttaagttcagttatgcattgaaccgttgcctcatgacttatttgattttcgta |
25692632 |
T |
|
| Q |
414 |
agtatctctgct |
425 |
Q |
| |
|
||||||| |||| |
|
|
| T |
25692631 |
agtatctatgct |
25692620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 214 - 425
Target Start/End: Complemental strand, 25798770 - 25798568
Alignment:
| Q |
214 |
aacacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctct |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
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|
| T |
25798770 |
aacacatacattgattaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatct |
25798671 |
T |
|
| Q |
314 |
cacatgtcaaacgaagcatgcggacgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgta |
413 |
Q |
| |
|
||| |||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
25798670 |
cacgtgtcaaacgaagcatgcggatgcttc---------tcttcatcttaagttcttttatgcattgaaccgttgcctcatgacttacttgattttcgta |
25798580 |
T |
|
| Q |
414 |
agtatctctgct |
425 |
Q |
| |
|
||||||| |||| |
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|
| T |
25798579 |
agtatctatgct |
25798568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 420
Target Start/End: Complemental strand, 25602836 - 25602701
Alignment:
| Q |
283 |
gcttctgaatccttcatgtatgaaagcctctcacatgtcaaacgaagcatgcggacgcttcgtttataattct--tcatcttaagttcagttatgcgttg |
380 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||||||||||||||| || | | | | |||| ||||||||||||| |||||||||| |
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|
| T |
25602836 |
gcttctgaatctttcatgtatgaaagcatctcacgtgtcaaacgaagcatgcaga----ttgcagacacttctcttcatcttaagttctgttatgcgttc |
25602741 |
T |
|
| Q |
381 |
aaccgttgcctcatgaaatacttgattttcgtaagtatct |
420 |
Q |
| |
|
|||||||||||||||| | |||| |||||| ||||||||| |
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|
| T |
25602740 |
aaccgttgcctcatgacaaactttattttcataagtatct |
25602701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 214 - 425
Target Start/End: Original strand, 38498 - 38700
Alignment:
| Q |
214 |
aacacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctct |
313 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
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|
| T |
38498 |
aacacatccattgataaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatct |
38597 |
T |
|
| Q |
314 |
cacatgtcaaacgaagcatgcggacgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgta |
413 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38598 |
cacgtgtcaaacgaagcatgcggacgcttc---------tcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgta |
38688 |
T |
|
| Q |
414 |
agtatctctgct |
425 |
Q |
| |
|
||||||| |||| |
|
|
| T |
38689 |
agtatctatgct |
38700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 209 - 425
Target Start/End: Original strand, 19096 - 19303
Alignment:
| Q |
209 |
tttggaacacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaag |
308 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| |||||| | |||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
19096 |
tttgtaacacatacattaataaatatgtaaaaaaagaagcaaatttataacacaactaaaatagttttttataagcttctgaatcttccatgtatgaaaa |
19195 |
T |
|
| Q |
309 |
cctctcacatgtcaaacgaagcatgcggacgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattt |
408 |
Q |
| |
|
| |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| |
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|
| T |
19196 |
catctcacgtgtcaaacgaagcatgcggatgcttc---------tcttcatcttaagttcagttatgcgtggaaccgttgactcatgacttacttaattt |
19286 |
T |
|
| Q |
409 |
tcgtaagtatctctgct |
425 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
19287 |
tcgtaagtatctatgct |
19303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 19031 - 19098
Alignment:
| Q |
209 |
tttggaacacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttt |
276 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
19031 |
tttgtaacacatacattgataaacatgtaaaagaagaagcacatctataatgcaactaaaatagtttt |
19098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 238 - 425
Target Start/End: Complemental strand, 3918 - 3740
Alignment:
| Q |
238 |
aaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctctcacatgtcaaacgaagcatgcgga |
337 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||| ||| |
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|
| T |
3918 |
aaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgtgga |
3819 |
T |
|
| Q |
338 |
cgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgtaagtatctctgct |
425 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
3818 |
tgcttc---------tcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatctatgct |
3740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 214 - 425
Target Start/End: Complemental strand, 20592124 - 20591923
Alignment:
| Q |
214 |
aacacatacattgataaatatgtaaaagaagaagaacatttataatgcaactaaaatagtttttcataagcttctgaatccttcatgtatgaaagcctct |
313 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
20592124 |
aacacatacattgataaacatgtaaaagaagaagcacatctataatgcaactaaaatag-ttttcataagcttctgaatcttccatgtatgaaagcatct |
20592026 |
T |
|
| Q |
314 |
cacatgtcaaacgaagcatgcggacgcttcgtttataattcttcatcttaagttcagttatgcgttgaaccgttgcctcatgaaatacttgattttcgta |
413 |
Q |
| |
|
||| |||||||||||||||||||| ||||| |||||||||||||||| |||| |||| ||||||||| |||||| |||||||||||| || |
|
|
| T |
20592025 |
cacgtgtcaaacgaagcatgcggatgcttc---------tcttcatcttaagttctattatacgttcaaccgttgcgtcatgacttacttgattttcata |
20591935 |
T |
|
| Q |
414 |
agtatctctgct |
425 |
Q |
| |
|
||||||| |||| |
|
|
| T |
20591934 |
agtatctatgct |
20591923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 30163104 - 30163196
Alignment:
| Q |
18 |
atatgcctcaagaaacattggagagtttgcttgttgtttaaagctatttaagaaaatattacttcaatctttatttggatatccatgagttta |
110 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||| |||||| |||||| ||||||||||| |||| |||||||||| |||| || |||||||| |
|
|
| T |
30163104 |
atatgcctcaagaaaaattggagagtttacttgtggtttaatgctattgaagaaaatatttcttccatctttattttgataaccctgagttta |
30163196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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