View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_high_4 (Length: 775)

Name: NF11932_high_4
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_high_4
NF11932_high_4
[»] chr2 (28 HSPs)
chr2 (278-577)||(35348092-35348389)
chr2 (278-579)||(35343400-35343698)
chr2 (282-571)||(35355589-35355876)
chr2 (287-523)||(35345987-35346220)
chr2 (6-159)||(35348491-35348644)
chr2 (278-504)||(35371482-35371708)
chr2 (641-750)||(35347929-35348038)
chr2 (299-504)||(35374296-35374492)
chr2 (297-437)||(35364256-35364396)
chr2 (282-502)||(35368116-35368333)
chr2 (641-752)||(35368412-35368525)
chr2 (56-168)||(35343846-35343958)
chr2 (212-278)||(35348424-35348490)
chr2 (641-752)||(35343249-35343360)
chr2 (666-757)||(35374591-35374682)
chr2 (641-757)||(35335795-35335911)
chr2 (666-757)||(35355963-35356054)
chr2 (672-757)||(35364633-35364718)
chr2 (286-361)||(35351004-35351079)
chr2 (663-757)||(35371801-35371895)
chr2 (666-757)||(35351400-35351491)
chr2 (209-269)||(35371372-35371432)
chr2 (282-360)||(35340577-35340656)
chr2 (282-355)||(35335492-35335565)
chr2 (488-560)||(35351227-35351299)
chr2 (669-757)||(35346336-35346426)
chr2 (207-261)||(35355370-35355425)
chr2 (488-559)||(35340805-35340876)
[»] chr4 (4 HSPs)
chr4 (309-435)||(9060332-9060458)
chr4 (309-369)||(9063694-9063754)
chr4 (309-435)||(9072697-9072820)
chr4 (300-435)||(9077320-9077454)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 278 - 577
Target Start/End: Complemental strand, 35348389 - 35348092
Alignment:
Q  278 agaagactaatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgat 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  35348389 agaagactaatgtaagttaacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtcatcatcaccttccttgcatgagtctcgat 35348290  T
Q  378 ctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagt 477  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||   |||||||||||  |||||||| |||||||||||||||||    
T  35348289 ctccattgcgattatcttctttaatgcaagatacacttgtataaccaaaccaatcacc---gttaccttcactgtatccatgatgcttgcactttggagt 35348193  T
Q  478 aatggccaaagaaatggatgccatttttgttttaacgctggctatg-taaaaagtgtatgttgaaaagaagaaaatggaattagatatacgatatgctaa 576  Q
    ||| ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||  |||||||||||||||||||| |||| ||||||||||    
T  35348192 aatagccaaagaaatggatgccatttttgtttttacgctggctatgttaaaaaatgtatgttataaagaagaaaatggaattagttatatgatatgctaa 35348093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 278 - 579
Target Start/End: Complemental strand, 35343698 - 35343400
Alignment:
Q  278 agaagactaatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgat 377  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  35343698 agaagactaatgtaagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtctcgat 35343599  T
Q  378 ctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagt 477  Q
    |||||||| ||| || ||||||||||||||||||||||||||||| || |||||||||   |||||||||||||||||||||||||| |||||||||| |    
T  35343598 ctccattgtgataattttcttcaatgcaagatacacatgtataactaatccaatcacc---gttaccttcaccatatccatgctgctcgcactttggaat 35343502  T
Q  478 aatggccaaagaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaattagatatacgatatgctaag 577  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||    
T  35343501 aatggccaaagaaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagttatatgatatgctaag 35343402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 282 - 571
Target Start/End: Original strand, 35355589 - 35355876
Alignment:
Q  282 gactaatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctcc 381  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||| || | ||||||||||||||    
T  35355589 gacttatgtaagttaacacattagagttttaggcagcaggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgatctcc 35355688  T
Q  382 attgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagtaatg 481  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||    ||||||||| |||||||||||| |||||||||||||||||||    
T  35355689 attgcgataatcttcttcaatgcaagatacatatgtataaccaaaccaatcacc---attaccttcatcatatccatgctccttgcactttggagtaatg 35355785  T
Q  482 gccaaagaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgtt-gaaaagaagaaaatggaattagatatacgatat 571  Q
    |||| |||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |||||    
T  35355786 gccatagaaattgatgccattttggttttgacgcttgctatgtaaaaagtgtatgttggaaaagaagaaaatggaattagttatatgatat 35355876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 287 - 523
Target Start/End: Original strand, 35345987 - 35346220
Alignment:
Q  287 atgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctccattgc 386  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||| ||||||||| | || ||| |||| |||||||    
T  35345987 atgtaagttaacacattagagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgc 35346086  T
Q  387 gattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagtaatggccaa 486  Q
    ||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||   ||||||||| || ||| ||||||||||  ||||| |||| ||      
T  35346087 gataatcttctacaatacaagatacagatgtataaccaaaccaatcaccgttg---ccttcaccacatgcattctgcttgcacaatggagcaatgaccgt 35346183  T
Q  487 agaaatggatgccatttttgttttaacgctggctatg 523  Q
      |||||||||||||||| ||||| | ||||||||||    
T  35346184 gaaaatggatgccattttagttttgaagctggctatg 35346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 35348644 - 35348491
Alignment:
Q  6 agcagcacagatgtcgcgaatcctatcattgcttgaggcgagttattttaagttagaattaaaatggaacctaactgggctacacactaactcgtgtgtt 105  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||||    
T  35348644 agcaccacagatatcgcaaatcctattattgcttgaggcgagttattttgagttagaattaaaatggaacctaagtgtgctacatactaactcgtgtgtt 35348545  T
Q  106 ttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacactcttt 159  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  35348544 ttgtgcgagattcttgtcgtgccaagtatcattgttcaaaacttaacactcttt 35348491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 278 - 504
Target Start/End: Original strand, 35371482 - 35371708
Alignment:
Q  278 agaagactaatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatca---------ccttccttgcatg 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || |||         |||||||||||||    
T  35371482 agaagactaatgtaagttaacacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtcgtcatcgtcgtcgccttccttgcatg 35371581  T
Q  369 agtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgca 468  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||         ||||||||||||||| |||| ||||||||    
T  35371582 agtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaa---------ttaccttcaccatatacatgttgcttgca 35371672  T
Q  469 ctttggagtaatggccaaagaaatggatgccatttt 504  Q
    |||| ||| |||| |||   ||||||||||||||||    
T  35371673 ctttagagcaatgaccatcaaaatggatgccatttt 35371708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 641 - 750
Target Start/End: Complemental strand, 35348038 - 35347929
Alignment:
Q  641 atatatatcaagaagagaagtagttgagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctg 740  Q
    ||||||| ||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35348038 atatataacaagaagagaagttgttgagtagttctaacacaagcaaaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctg 35347939  T
Q  741 catgtgtaat 750  Q
    ||||||||||    
T  35347938 catgtgtaat 35347929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 299 - 504
Target Start/End: Original strand, 35374296 - 35374492
Alignment:
Q  299 acattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatcttctt 398  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| | | || ||||| ||||| ||  ||| ||||||||    
T  35374296 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt 35374395  T
Q  399 caatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagtaatggccaaagaaatggatgc 498  Q
    ||||||||||||||| ||||||| ||||||||         ||||||||||||||| |||| |||||||| ||| ||| |||| |||  |||||||||||    
T  35374396 caatgcaagatacacttgtataatcaaaccaa---------ttaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgc 35374486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 35364256 - 35364396
Alignment:
Q  297 acacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatcttc 396  Q
    |||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||| |||||| || || | | |||||| || |||  || ||||||    
T  35364256 acacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttc 35364355  T
Q  397 ttcaatgcaagatacacatgtataaccaaaccaatcaccgt 437  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  35364356 ttcaatgcaagatacacacgtataaccgaaccaatcaccgt 35364396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 282 - 502
Target Start/End: Original strand, 35368116 - 35368333
Alignment:
Q  282 gactaatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctcc 381  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||| ||||||    | || ||  ||||       
T  35368116 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccaataagaatcatgatccgt 35368215  T
Q  382 attgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagtaatg 481  Q
     ||  ||| |||||||||||| ||||||||| ||||| |||||||||||||| |    | ||||||||||||| ||||||||||||| ||| ||| ||||    
T  35368216 gttatgataatcttcttcaatacaagatacagatgtacaaccaaaccaatcaac---ttcaccttcaccatatgcatgctgcttgcagtttagagcaatg 35368312  T
Q  482 gccaaagaaatggatgccatt 502  Q
     |||  |||||| || |||||    
T  35368313 accatggaaatgaataccatt 35368333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 641 - 752
Target Start/End: Original strand, 35368412 - 35368525
Alignment:
Q  641 atatatatcaagaagagaagtagttg-agttgttctaccacaagcagaccacacaagaagtgtgtaagtttgctt-aaggtatgagcatggctacgtgcc 738  Q
    ||||||| | |||||| |||| |||| |||||||||| |||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  35368412 atatataactagaagataagttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaaaggaatgagcatggctacgtgcc 35368511  T
Q  739 tgcatgtgtaatgg 752  Q
    ||||||||||||||    
T  35368512 tgcatgtgtaatgg 35368525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 35343958 - 35343846
Alignment:
Q  56 agttagaattaaaatggaacctaactgggctacacactaactcgtgtgttttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacact 155  Q
    |||| ||||||||||||||| |   || |||||| |||||||||||||||||  |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  35343958 agttggaattaaaatggaacatgtgtgagctacatactaactcgtgtgttttacgcgaaattatttttgtgccaagtatcattattcaaaacttaacact 35343859  T
Q  156 ctttcgtattgat 168  Q
    |||| ||||||||    
T  35343858 cttttgtattgat 35343846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 35348490 - 35348424
Alignment:
Q  212 tgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaacaataaacga 278  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35348490 tgacatcgagcctatttacaggcactaacaaacaaatagttaagtactaaattcgaacaataaacga 35348424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 641 - 752
Target Start/End: Complemental strand, 35343360 - 35343249
Alignment:
Q  641 atatatatcaagaagagaagtagttgagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctg 740  Q
    ||||||| | ||||||||| | |||||||| ||| |||||||  | ||||||||||||||||||| |||| |||||||| ||||| | ||||||||||||    
T  35343360 atatataactagaagagaacttgttgagttattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagctttgctacgtgcctg 35343261  T
Q  741 catgtgtaatgg 752  Q
    ||||||||||||    
T  35343260 catgtgtaatgg 35343249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 666 - 757
Target Start/End: Original strand, 35374591 - 35374682
Alignment:
Q  666 gagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatggaatct 757  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||  ||  ||||||||||||||||| ||||||    
T  35374591 gagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatct 35374682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 641 - 757
Target Start/End: Original strand, 35335795 - 35335911
Alignment:
Q  641 atatatatcaagaagagaagtagttgagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctg 740  Q
    ||||||| | |||||| |||  |||||| ||||||| |||||||| ||||| || |||||||||  ||||||||||||| |||||||||||  |||||||    
T  35335795 atatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaaggtgtgagcatggctcggtgcctg 35335894  T
Q  741 catgtgtaatggaatct 757  Q
    |||||||||||| ||||    
T  35335895 catgtgtaatggcatct 35335911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 666 - 757
Target Start/End: Original strand, 35355963 - 35356054
Alignment:
Q  666 gagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatggaatct 757  Q
    ||||||||||| |||||| | ||||||||||||||||||| ||||||||||||| |||||||  ||  ||||||||||||||||| ||||||    
T  35355963 gagttgttctaacacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatct 35356054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 672 - 757
Target Start/End: Original strand, 35364633 - 35364718
Alignment:
Q  672 ttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatggaatct 757  Q
    |||| ||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||| |||||||||||||| ||||    
T  35364633 ttcttccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatct 35364718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 35351004 - 35351079
Alignment:
Q  286 aatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttcc 361  Q
    ||||||||||| ||||||||||| ||| ||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  35351004 aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatcatcaccttcc 35351079  T

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Target: chr2; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 757
Target Start/End: Original strand, 35371801 - 35371895
Alignment:
Q  663 gttgagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatggaatct 757  Q
    |||||||| || | ||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||| | |||||||||||| ||||    
T  35371801 gttgagttattgtgccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttccatgtgtaatgggatct 35371895  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 666 - 757
Target Start/End: Original strand, 35351400 - 35351491
Alignment:
Q  666 gagttgttctaccacaagcagaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatggaatct 757  Q
    ||||||| ||| |||||||| ||||  || ||||||||||  |||||| ||||| |||||||||||||||||  ||||||||||||||||||    
T  35351400 gagttgtcctaacacaagcaaaccatgcaggaagtgtgtatctttgctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatct 35351491  T

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Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 35371372 - 35371432
Alignment:
Q  209 taatgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaac 269  Q
    |||||||||| |||||||||| | ||| ||||||||||||||||||||||||| |||||||    
T  35371372 taatgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaac 35371432  T

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Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 35340577 - 35340656
Alignment:
Q  282 gactaatgtaagttaacacattagagtttt-aggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttc 360  Q
    ||||||| |||||| ||||||||||||||| | ||||| ||||||||||| |||||||  || |||||||||||||||||    
T  35340577 gactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatcatcaccttc 35340656  T

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Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 35335492 - 35335565
Alignment:
Q  282 gactaatgtaagttaacacattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatca 355  Q
    |||||||||||||||||||||||    |||| ||||||||||||||||| ||||||| ||| || |||||||||    
T  35335492 gactaatgtaagttaacacattactactttatgcagcgggagcatagtcataaccaccgtcgtcatcatcatca 35335565  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 560
Target Start/End: Original strand, 35351227 - 35351299
Alignment:
Q  488 gaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaattag 560  Q
    ||||||||||||||||| ||||| ||||||  ||||| |||||| | | || |||||||||||||||||||||    
T  35351227 gaaatggatgccattttggttttgacgctgattatgtgaaaagtttgtatttaaaagaagaaaatggaattag 35351299  T

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Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 669 - 757
Target Start/End: Original strand, 35346336 - 35346426
Alignment:
Q  669 ttgttctaccacaagcagaccacacaagaagtgtgtaagt--ttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatggaatct 757  Q
    |||||||| |||||| | ||||||||||||||||||  ||  ||||||||||| |||||||||||   |||||||||||| ||||| ||||    
T  35346336 ttgttctatcacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatct 35346426  T

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Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 35355370 - 35355425
Alignment:
Q  207 tataatgacatccagcctatttac-aggcactaacaaactaatagttaagtactaa 261  Q
    |||||||||||| |||||||| |  |||||||||||||||||||||||||||||||    
T  35355370 tataatgacatcgagcctattaaataggcactaacaaactaatagttaagtactaa 35355425  T

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Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 559
Target Start/End: Original strand, 35340805 - 35340876
Alignment:
Q  488 gaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaatta 559  Q
    |||||||||| |||||| ||| | | | ||||||||| |||||||| || | ||||||||||||||||||||    
T  35340805 gaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaatta 35340876  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 9060458 - 9060332
Alignment:
Q  309 tttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaaga 408  Q
    |||| |||||||||||||| || || ||||  ||||||||||||||||||||| || |||| |||   |||||| || ||||||||| ||||||||||      
T  9060458 tttaagcagcgggagcataatcatatccaccatcatcgtcatcatcaccttccctgtatgaatcttcttctccaatgtgattatcttgttcaatgcaacc 9060359  T
Q  409 tacacatgtataaccaaaccaatcacc 435  Q
    |||| ||| ||||| |||||| |||||    
T  9060358 tacagatgcataacaaaaccattcacc 9060332  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 9063754 - 9063694
Alignment:
Q  309 tttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatga 369  Q
    |||| ||||||||||||||||| |||||||  |||||||||||||||||||||||| ||||    
T  9063754 tttaagcagcgggagcatagtcataaccaccatcatcgtcatcatcaccttccttgtatga 9063694  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 309 - 435
Target Start/End: Complemental strand, 9072820 - 9072697
Alignment:
Q  309 tttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaaga 408  Q
    |||| ||||| ||||||||||| || ||||  |||||||||||||||||||||||| |||| ||   ||||||| || ||| |   |||||||||||||     
T  9072820 tttaagcagcaggagcatagtcatagccaccatcatcgtcatcatcaccttccttgtatgaatccacatctccaatgtgataa---tcttcaatgcaagc 9072724  T
Q  409 tacacatgtataaccaaaccaatcacc 435  Q
    |||| ||| |||||||||||| |||||    
T  9072723 tacagatgcataaccaaaccattcacc 9072697  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 435
Target Start/End: Complemental strand, 9077454 - 9077320
Alignment:
Q  300 cattagagttttaggcagcgggagcatagtcgtaaccactgtcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatcttcttc 399  Q
    ||||||||||| || | ||||||||||| || ||| |||  || |||||||||||||||||| || |||| |||  ||||||| || | | |||||| ||    
T  9077454 cattagagtttaag-cggcgggagcataatcataatcaccatcgtcgtcatcatcaccttccctgtatgaatctacatctccagtgtggtaatcttcatc 9077356  T
Q  400 aatgcaagatacacatgtataaccaaaccaatcacc 435  Q
    | ||||||||||| ||| | |||||||||| |||||    
T  9077355 attgcaagatacagatgcaaaaccaaaccattcacc 9077320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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