View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_43 (Length: 361)
Name: NF11932_high_43
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 18218861 - 18219190
Alignment:
| Q |
19 |
gtttttgtggtctctactggaggagaaagatgaggggaaaagggtccagtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggct |
118 |
Q |
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| T |
18218861 |
gtttttgtggtctctagtggaggagaaagatgaggggaaaagggtccagtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggct |
18218960 |
T |
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| Q |
119 |
taacaggagaagatggaataggtatggacaatgacaagttatgagtgttggaatttgagacaagcttgggtgctgaggtggtagatgaggaagctgaggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18218961 |
taacaggagaagatggaataggtatggacaatgacaagttatgagtgttggaatttgagacaagcttgggtgctgaggtggtagatgaggaagctgaggt |
18219060 |
T |
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| Q |
219 |
tggggttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttgg |
318 |
Q |
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| T |
18219061 |
tggggttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttgg |
18219160 |
T |
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| Q |
319 |
aaaccacttttcagcctttctatctctgct |
348 |
Q |
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| T |
18219161 |
aaaccacttttcagcctttctatctttgct |
18219190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 43010873 - 43010984
Alignment:
| Q |
19 |
gtttttgtggtctctactggaggagaaagatgaggggaaaagggtcca-----gtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaa |
113 |
Q |
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| T |
43010873 |
gtttttgtggtctctagtggaggagaaagataagtggaaaagggtccaatgacatgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaa |
43010972 |
T |
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| Q |
114 |
tggcttaacagg |
125 |
Q |
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| T |
43010973 |
tggcttaacagg |
43010984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 43010995 - 43011093
Alignment:
| Q |
211 |
gctgaggttggggttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttg |
309 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||| |||||||||||||||||||| |||| |
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| T |
43010995 |
gctgaggatggggttgggaccacagtgtgttcatcaaggttggttacaacatgtggatacaaactcgtatttgaccacataaaggtccctcttgttttg |
43011093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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