View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_44 (Length: 354)
Name: NF11932_high_44
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 44475392 - 44475715
Alignment:
| Q |
14 |
agcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctt |
113 |
Q |
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| T |
44475392 |
agcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctt |
44475491 |
T |
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| Q |
114 |
tataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttgtttcaactattttatagagttgatgggcttcaagtgt |
213 |
Q |
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| T |
44475492 |
tataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttgtttcaactattttatagagttgatgggcttcaagtgt |
44475591 |
T |
|
| Q |
214 |
tttaaaaaatgtgagcagacggtttgactgcttgattcccaaatcagattagtatgattattagtttcaacttattcaggatgattagagatagataaaa |
313 |
Q |
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| T |
44475592 |
tttaaaaaatgtgcgcagacggtttgactgcctgattcccaaatcagattagtatgattattagtttcaacttattcaggatgattagagatagataaaa |
44475691 |
T |
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| Q |
314 |
cataataaatatgaataattaaat |
337 |
Q |
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| T |
44475692 |
cataataaatatgaataattaaat |
44475715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 39849205 - 39849370
Alignment:
| Q |
17 |
agagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctttat |
116 |
Q |
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| T |
39849205 |
agagttcgtgcatatgggcaattttgaagaccatcaaagctattatatgaatcttaatctgc-----aacttggcatcaggtaaattatttgatctttta |
39849299 |
T |
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| Q |
117 |
aa-----aaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttgtttcaact |
184 |
Q |
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| T |
39849300 |
aaaaattaaagtattatggaaaatttgatatagtattcgtggttaccac--tattatcacctttctttcaact |
39849370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 38633481 - 38633586
Alignment:
| Q |
17 |
agagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctttat |
116 |
Q |
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| T |
38633481 |
agagatcgtgtatatgggcctttttgaagaccatcaaagctagtatctgaatcttaatctgc-----aacttggcaacaggtaaattacttgatctttaa |
38633575 |
T |
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| Q |
117 |
aaaaagtatta |
127 |
Q |
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||||||||||| |
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| T |
38633576 |
aaaaagtatta |
38633586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 38452792 - 38452736
Alignment:
| Q |
278 |
tttcaacttattcaggatgattagagatagataaaacataataaatatgaataattaaat |
337 |
Q |
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| T |
38452792 |
tttcaacttattcaggatgattagagatagataaaac---agaaatatgaataattaaat |
38452736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 39849863 - 39849903
Alignment:
| Q |
264 |
agtatgattattagtttcaacttattcaggatgattagaga |
304 |
Q |
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| T |
39849863 |
agtatgattattagtttcaacttattcaagatgattagaga |
39849903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 38453297 - 38453204
Alignment:
| Q |
84 |
aacttggcatcaggtaaattatttaatctttataa----aaagtattatagaaaatttgattttgtattcatggttaccactatattatcaccttt |
175 |
Q |
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|||||||||||||||||||||||| || ||| || ||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
38453297 |
aacttggcatcaggtaaattatttgattttttgaacaaaaaactattatggaaaatttgatatagtattcatggttaccac--tattatcaccttt |
38453204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 7045491 - 7045435
Alignment:
| Q |
27 |
tatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaactt |
83 |
Q |
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||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7045491 |
tatatggccattttagaagaccatcaaagctattatctgaatcttaatttgcaactt |
7045435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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