View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_45 (Length: 342)
Name: NF11932_high_45
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 44661516 - 44661179
Alignment:
| Q |
9 |
aatgaaaatggttcaacatcactacttaatttattgaaaatacatcattaaaccaacctaaagcgcctaatcaaccaaatagaaaccgaaacgaccaaag |
108 |
Q |
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| T |
44661516 |
aatgaaaatggttcaacatcagtacttaatttatggaaaatacatcatgaaaccaacctaaagcgcctaatcaaccaaatagaaacagaaacgaccaaag |
44661417 |
T |
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| Q |
109 |
acacaaccaaaa--gcattaggag--tattaagaaaataaaacaagacacataagtgattataaggggtttgcatttgcaccaacgataaaagttaacaa |
204 |
Q |
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| T |
44661416 |
acacaaccaaaaaagcattaggagagtattaagaaaataaaacaagacacataagtgattataaggggtttgcatttgcaccaactataaaagttaacaa |
44661317 |
T |
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| Q |
205 |
cgctttttgcagaagcaacgtctacggaatcccctgcaattaccacctggaaaaccttcaacatgacaaactgaagcacagttatgatcactcatacaca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44661316 |
cgctttttgcagaagcaacgtctacggaatcccctgcaattaccacctggaaaaccttcaacatgacaaactgaagcacagttatgatcactcatacaca |
44661217 |
T |
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| Q |
305 |
ttcctttgaatcgatggctctttgactcacagtgtctt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44661216 |
ttcctttgaatcgatggctctttgactcacagtgtctt |
44661179 |
T |
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