View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_47 (Length: 339)
Name: NF11932_high_47
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 19236557 - 19236231
Alignment:
| Q |
2 |
ttagacataatggccataatttagggatctagacctataagagaattagatgactagtccgtttgaaaacatgtgttagcttatttttattggtagagct |
101 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||| |
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| T |
19236557 |
ttagacataatggccataatttagg-atctagacctataagagaattagatgactagtacttttgaaaacatgtgttagcttactgagtttggtagagct |
19236459 |
T |
|
| Q |
102 |
gtctgcaattttggttgagggtttcatcctatatttcagatatttctaagaaattacccgagcttttatagaaagactggtcctacctgggcatcagttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19236458 |
gtctgcaattttggttgagggtttcatcctatatttcagatatttctaagaaattacccgagcttttatagaaagactagtcctacctgggcatcagttt |
19236359 |
T |
|
| Q |
202 |
ttctatacagagatgtataacaagtatgtagctcttttgctgtagcttttctcccaatgtaaattaatacatactacttagtaagggacgctgcctattt |
301 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19236358 |
ttctatacagagatgtgtaacaagtatgtcgctcttttgctgtagcttttctcctaatgtaaattaatacatactacttagtaagggacgctgcctattt |
19236259 |
T |
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| Q |
302 |
ctgcatcgtctctatgatattttgatgt |
329 |
Q |
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| T |
19236258 |
cggcatcgtctctatgatattttgatgt |
19236231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 327
Target Start/End: Original strand, 42173598 - 42173923
Alignment:
| Q |
2 |
ttagacataatggccataatttagggatctagacctataagagaattagatgactagtccgtttgaaaacatgtgttagcttatttttattggtagagct |
101 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||| | ||||||||| | |
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| T |
42173598 |
ttagaaataatggccacaatttagggatctagacctataagagaattagatgactagtacttttgagaacatgtgctagcttactgagtttggtagagtt |
42173697 |
T |
|
| Q |
102 |
gtctgcaattttggttgagggtttcatcctatatttcagatatttctaagaaattacccgagcttttatagaaagactggtcctacctgggcatcagttt |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
42173698 |
gtctgcaattttggttgagggtttcatcctacatttcagatatttctaagaaattacctgagcttttatagaaagactagtcctacatgggcatcagttt |
42173797 |
T |
|
| Q |
202 |
ttctatacagagatgtataacaagtatgtagctcttttgctgtagcttttctcccaatgtaaattaatacatactacttagtaagggacgctgcctattt |
301 |
Q |
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|| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
42173798 |
ttttatacagagatgtgtaacaagtatttagctcttttgctgtagcttttctcctaatgtaaattaatacatgctacttagtaagggacgttacctattt |
42173897 |
T |
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| Q |
302 |
ctgcatcgtctctatgatattttgat |
327 |
Q |
| |
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||||||||||| ||||||||| |||| |
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| T |
42173898 |
ctgcatcgtctgtatgatattgtgat |
42173923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 25623257 - 25622929
Alignment:
| Q |
1 |
attagacataatggccataatttagggatctagacctataagagaattagatgactagtccgtttgaaaacatgtgttagcttatttttattggtagagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| | |||||||||| |
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| T |
25623257 |
attagacataatggccataatttacggatctagaccattaaaagaattagatgactagtacttttgaaaacatgtgttagcttactgagtttggtagagc |
25623158 |
T |
|
| Q |
101 |
tgtctgcaattttggttgagggtttcatcctatatttcagatatttctaagaaattacccgagcttttatagaaagactggtcctacctgggcatcagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
25623157 |
tgtctgcaattttggttgagggtttcatcctatatttcagatatttctaagaaattacccgagcctttatagaaagactggtcctgcccgggcatcagtt |
25623058 |
T |
|
| Q |
201 |
tttctatacagagatgtataacaagtatgtagctcttttgctgtagcttttctcccaatgtaaattaatacatactacttagtaagggacgctgcctatt |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25623057 |
tttctatacagagatgtgtaacaagtatgtagctcttttgctgtagcttttctcctaatgtaaattaatacatactacttggtaagggacgctgcctatt |
25622958 |
T |
|
| Q |
301 |
tctgcatcgtctctatgatattttgatgt |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25622957 |
tctgcatcgtctctatgatattttgatgt |
25622929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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