View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_high_54 (Length: 310)

Name: NF11932_high_54
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_high_54
NF11932_high_54
[»] chr7 (6 HSPs)
chr7 (57-310)||(37366032-37366287)
chr7 (1-32)||(44479935-44479966)
chr7 (1-32)||(47713717-47713748)
chr7 (1-32)||(47713794-47713825)
chr7 (2-32)||(23474185-23474215)
chr7 (2-32)||(31466574-31466604)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-32)||(12767-12798)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1-32)||(10408-10439)
[»] chr5 (3 HSPs)
chr5 (1-32)||(5364435-5364466)
chr5 (1-32)||(40512895-40512926)
chr5 (2-30)||(5213138-5213166)
[»] chr3 (4 HSPs)
chr3 (1-32)||(38833679-38833710)
chr3 (1-32)||(51062405-51062436)
chr3 (2-30)||(34827339-34827367)
chr3 (2-30)||(38492069-38492097)
[»] chr2 (2 HSPs)
chr2 (1-32)||(42038538-42038569)
chr2 (2-30)||(7443107-7443135)
[»] chr8 (1 HSPs)
chr8 (1-30)||(2986356-2986385)
[»] chr6 (1 HSPs)
chr6 (2-30)||(18991921-18991949)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 57 - 310
Target Start/End: Complemental strand, 37366287 - 37366032
Alignment:
Q  57 tatatgtgttgatgagaagaaacttgcttatacatctttgtcaaaatgggagacgatacatttt--cattgaaaacttttaagtcataaggtaaatgagt 154  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  37366287 tatatatgttgatgagaagaaacttgcttatacatctttgtcaaaaagggagacgatacattttttcatcgaaaacttttaagtcataaggtaaatgagt 37366188  T
Q  155 catttcttttttacagtcgacttggacacttaatcacttacactttcttgtgtaggaaaattgagtgtactctggttaaaaacccaacaggttcaactgg 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37366187 catttcttttttatagtcgacttggacacttaatcacttacactttcttgtgtaggaaaattgagtgtactctggttaaaaacccaacaggttcaactgg 37366088  T
Q  255 tgctgtctctcttaaactctttgcaagtagttgtcatatgaaaaacttgctttctc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37366087 tgctgtctctcttaaactctttgcaagtagttgtcatatgaaaaacttgctttctc 37366032  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 44479935 - 44479966
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  44479935 tgtgtgtcagagtcaactaggtcacttattta 44479966  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 47713717 - 47713748
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  47713717 tgtgtgtcagagtcaactaggtcacttattta 47713748  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 47713794 - 47713825
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  47713794 tgtgtgtcagagtcaactaggtcacttattta 47713825  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 23474185 - 23474215
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttattta 32  Q
    |||||||||||||||||||||||||||||||    
T  23474185 gtgtgtcagagtcaactaggtcacttattta 23474215  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 31466574 - 31466604
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttattta 32  Q
    |||||||||||||||||||||||||||||||    
T  31466574 gtgtgtcagagtcaactaggtcacttattta 31466604  T

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Target: scaffold0459 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 12798 - 12767
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  12798 tgtgtgtcagagtcaactaggtcacttattta 12767  T

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Target: scaffold0366 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10439 - 10408
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  10439 tgtgtgtcagagtcaactaggtcacttattta 10408  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5364466 - 5364435
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  5364466 tgtgtgtcagagtcaactaggtcacttattta 5364435  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40512895 - 40512926
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  40512895 tgtgtgtcagagtcaactaggtcacttattta 40512926  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 5213138 - 5213166
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttatt 30  Q
    |||||||||||||||||||||||||||||    
T  5213138 gtgtgtcagagtcaactaggtcacttatt 5213166  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 38833710 - 38833679
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  38833710 tgtgtgtcagagtcaactaggtcacttattta 38833679  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 51062436 - 51062405
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  51062436 tgtgtgtcagagtcaactaggtcacttattta 51062405  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 34827367 - 34827339
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttatt 30  Q
    |||||||||||||||||||||||||||||    
T  34827367 gtgtgtcagagtcaactaggtcacttatt 34827339  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 38492097 - 38492069
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttatt 30  Q
    |||||||||||||||||||||||||||||    
T  38492097 gtgtgtcagagtcaactaggtcacttatt 38492069  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42038569 - 42038538
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttattta 32  Q
    ||||||||||||||||||||||||||||||||    
T  42038569 tgtgtgtcagagtcaactaggtcacttattta 42038538  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 7443107 - 7443135
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttatt 30  Q
    |||||||||||||||||||||||||||||    
T  7443107 gtgtgtcagagtcaactaggtcacttatt 7443135  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2986385 - 2986356
Alignment:
Q  1 tgtgtgtcagagtcaactaggtcacttatt 30  Q
    ||||||||||||||||||||||||||||||    
T  2986385 tgtgtgtcagagtcaactaggtcacttatt 2986356  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 18991949 - 18991921
Alignment:
Q  2 gtgtgtcagagtcaactaggtcacttatt 30  Q
    |||||||||||||||||||||||||||||    
T  18991949 gtgtgtcagagtcaactaggtcacttatt 18991921  T

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