View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_62 (Length: 275)
Name: NF11932_high_62
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4770336 - 4770073
Alignment:
| Q |
1 |
tcaggcactgagttctgtactggaaagggcttctacctcgatggactactcgttaagaacaccacgtccttgcaaacagatgcagcagacatctactatg |
100 |
Q |
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| T |
4770336 |
tcaggcactgagttctgtactggaaagggcttctacctcgatggactactcgttaagaacaccacgtccttgcaaacagatgcagcagacatctactatg |
4770237 |
T |
|
| Q |
101 |
tcatgcaaccatgaattttgctcttgttgatgccaaacattttggttcgttaattgataaccggtttaaatgcatttttagtctccaatttttactaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4770236 |
tcatgcaaccatgaattttgctcttgttgatgccaaacattttggttcgttaattgataaccggtttaaatgcatttttagtctccaatttttactgatt |
4770137 |
T |
|
| Q |
201 |
tatgattttggttctcatatttctaaactcgttattttggttcctcaaattttaaaatgtctaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4770136 |
tatgattttggttctcatatttctaaactcgttattttggttccccaaattttaaaatgtctaa |
4770073 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 50343461 - 50343535
Alignment:
| Q |
190 |
ttttactaatttatgattttggttctcatatttctaaactcgttattttggttcctcaaattttaaaatgtctaa |
264 |
Q |
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||||||||||| | ||||||||||| ||||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
50343461 |
ttttactaattcacgattttggttcctatatttctaaatttactattttggtttcccaaattttaaaatgtctaa |
50343535 |
T |
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