View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_66 (Length: 264)
Name: NF11932_high_66
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 2625254 - 2625046
Alignment:
| Q |
43 |
tatgcttcttgtgatcttggtgaaacgtaaatgcatacattcttt-gttagctcaaaggctactaatttatggaagttagttggcatttatgacaccttt |
141 |
Q |
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| T |
2625254 |
tatgtttcttgtgatcttggtgaaacgtaaatgcatacatttttttgtttgctcaaaggctactaatttatggaagttaattggcatttatgacaccttt |
2625155 |
T |
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| Q |
142 |
caaatgctcctccctaatgctaacaatttcatgacaacactcttgatttatttgacacgttggcaacacaataacaattattagtagcaattaccatatg |
241 |
Q |
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|||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2625154 |
caaatgttcctccctaatgttaacaatttgatgacaacactcttgatttatttgacacgttggcaacacaataacaattattagtagcaattaccatatg |
2625055 |
T |
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| Q |
242 |
gagtttatg |
250 |
Q |
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||||||||| |
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| T |
2625054 |
gagtttatg |
2625046 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 33708042 - 33708082
Alignment:
| Q |
63 |
tgaaacgtaaatgcatacattctttgttagctcaaaggcta |
103 |
Q |
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| T |
33708042 |
tgaaacgcaaatgcatacattctttgtttgctcgaaggcta |
33708082 |
T |
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