View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_69 (Length: 253)
Name: NF11932_high_69
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_69 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 17981038 - 17980786
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaattgagggagaaagtcaacacaatttccataaaaa |
100 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17981038 |
tattcttaacatatttttcaatcattttcttttagtttaatccaaaatagaggactattagaacaattgagggagaaagtcaacacaatttccataaaag |
17980939 |
T |
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| Q |
101 |
atttctccctctaaatttgagcctgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagacacccgacatcaagtttaa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
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| T |
17980938 |
ttttctccctctaaatttgagcatgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagactcctgacttcaagtttaa |
17980839 |
T |
|
| Q |
201 |
tgtaccctgaacccaaaccatatgtaggccctcgatttttgcaaactgaaatt |
253 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17980838 |
tgtaccctgaacccaaaccatatgtaggtcctcgatttttgcaaactgaaatt |
17980786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 17974382 - 17974134
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaattgagggagaaagtcaacacaatttccataaaaa |
100 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17974382 |
tattcttaacatatttttcaatcattttcttttagtttaatccaaaatagaggagtattagaacaattgagggagaaagtcaacacaatttccataaaag |
17974283 |
T |
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| Q |
101 |
atttctccctctaaatttgagcctgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagacacccgacatcaagtttaa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||| |
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| T |
17974282 |
ttttctccctctaaatttgagcatgtgtttggtgctgagtatacggattgaaatccttcgtccattatgagaggcgaaagactcctgacttcaagcttaa |
17974183 |
T |
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| Q |
201 |
tgtaccctgaacccaaaccatatgtaggccctcgatttttgcaaactga |
249 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17974182 |
tgtaccctgaacccaaaccatatgtaggtcctcgatttttgcaaactga |
17974134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17981147 - 17981080
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaatt |
68 |
Q |
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|||| |||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
17981147 |
tatttttaacatatttttcagttattttattttagtttaatccaaaatagaggagtattagaacaatt |
17981080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17974491 - 17974424
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttagtttaatccaaaatagtggagtattagaacaatt |
68 |
Q |
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|||| |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
17974491 |
tatttttaacatatttttcagttattttattttagtttaatccaaaatagaggagtatttgaacaatt |
17974424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2505919 - 2505850
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttagttta-atccaaaatagtggagtattagaacaattg |
69 |
Q |
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|||||||| |||||||| |||||||||| |||||||| ||||||||||| ||||| |||||||||||| |
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| T |
2505919 |
tattcttagcatatttttcagtcatttttatttagtttcgatccaaaatagaggagttttagaacaattg |
2505850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 13281785 - 13281818
Alignment:
| Q |
36 |
tttaatccaaaatagtggagtattagaacaattg |
69 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
13281785 |
tttaatccaaaatagaggagtattagaacaattg |
13281818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25530752 - 25530818
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttagttt-aatccaaaatagtggagtattagaacaa |
66 |
Q |
| |
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|||||||| |||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
25530752 |
tattcttagcatatttttcagtcatttttatttagttttaatccaaaatagaggagtattagaacaa |
25530818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27912140 - 27912070
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttct-tttagttt-aatccaaaatagtggagtattagaacaattg |
69 |
Q |
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|||||||||||| |||| |||||||||| | |||||||| |||||||||||| |||||||||||||||||| |
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| T |
27912140 |
tattcttaacatgtttttcagtcattttttatttagttttaatccaaaatagaggagtattagaacaattg |
27912070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 28280339 - 28280289
Alignment:
| Q |
20 |
agtcattttcttttagttt-aatccaaaatagtggagtattagaacaattg |
69 |
Q |
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||||||||| |||||||| |||||||||||| |||||||||||||||||| |
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| T |
28280339 |
agtcatttttatttagttttaatccaaaatagaggagtattagaacaattg |
28280289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 34395415 - 34395448
Alignment:
| Q |
36 |
tttaatccaaaatagtggagtattagaacaattg |
69 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
34395415 |
tttaatccaaaatagaggagtattagaacaattg |
34395448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17662031 - 17661963
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttct-tttagttt-aatccaaaatagtggagtattagaacaat |
67 |
Q |
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|||||| | |||||||| |||||||||| | |||||||| ||||||||||| |||||||||||||||| |
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| T |
17662031 |
tattctaagcatatttttcagtcattttttatttagttttaatccaaaataaaggagtattagaacaat |
17661963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4057113 - 4057181
Alignment:
| Q |
1 |
tattcttaacatattttgcagtcattttcttttag-tttaatccaaaatagtggagtattagaacaatt |
68 |
Q |
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|||| ||| |||||||| ||||||||||| |||| |||| | |||||||| ||||||||||||||||| |
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| T |
4057113 |
tatttttagcatatttttcagtcattttcagttagctttatttcaaaatagaggagtattagaacaatt |
4057181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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