View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_79 (Length: 240)
Name: NF11932_high_79
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5693281 - 5693492
Alignment:
| Q |
1 |
aaatccggactaatctaagtatgaacccgtatatgcattaggatgcatatgatacggatacgtgaaattttttaaatttaaaatatgagacgatatatta |
100 |
Q |
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| T |
5693281 |
aaatccggactaatctaagtatgaacccatatatgcattaggatgcatatgatacggatacgtgaaattttttaaatttaaaatatgatacgatatatta |
5693380 |
T |
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| Q |
101 |
aca-caaccagattatagacaaagtgtttgtgtgtgtattgaacatgcgaaaatgacaaggtagtgagccacttcaaaaactc--aaccaaaattggttt |
197 |
Q |
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| T |
5693381 |
acatcaaccggattatagacaaagtg--tctgtgtgtattcaacatgcgaaaatgacaaggtagtgaaccactttaaaaactcaaaaccaaaattggttt |
5693478 |
T |
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| Q |
198 |
tggtttttaaaaaa |
211 |
Q |
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||| |||||||||| |
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| T |
5693479 |
tggcttttaaaaaa |
5693492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 43223011 - 43222978
Alignment:
| Q |
205 |
taaaaaagacttaattgtacttttgaccccctat |
238 |
Q |
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| T |
43223011 |
taaaaaagacttaattgtacttttggccccctat |
43222978 |
T |
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