View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_83 (Length: 238)
Name: NF11932_high_83
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_83 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 30223256 - 30223452
Alignment:
| Q |
1 |
cggtcacttggaagacattaagattgtgtctttttgcactgatgatctccttcagtacatagctaataggtaatattattgtccttttactcactttcaa |
100 |
Q |
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| T |
30223256 |
cggtcacttggaagacattgagattgtgtctttttgcactgatgatctccttcactacatagctagttggtaatattattttccttttgctcactttcaa |
30223355 |
T |
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| Q |
101 |
gtcttgcaaaatcacttattcatttatttataatgttatgttgtataatgatggctacagataatactgaatgatgtttacaaagtcttgttgatgtta |
199 |
Q |
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| T |
30223356 |
gtcttgcaaaattacttatacatttatttatgatgtaatactgtataatgatggctac--acaatgctgaatgatgtttacaaactcttgttgctgtta |
30223452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 30230504 - 30230632
Alignment:
| Q |
8 |
ttggaagacattaagattgtgtctttttgcactgatgatctccttcagtacatagctaataggtaatattattgtccttttactcactttcaagtcttgc |
107 |
Q |
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| T |
30230504 |
ttggaagacattgagattgtgtctttttgcactgatgatctccttcagtacatagctagttggtaatattattttccttttgctcactttcaattcttgc |
30230603 |
T |
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| Q |
108 |
aaaatcacttattcatttatttataatgt |
136 |
Q |
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| T |
30230604 |
aaaattacttattcatttatttatgatgt |
30230632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 30201339 - 30201474
Alignment:
| Q |
2 |
ggtcacttggaagacattaagattgtgtctttttgcactgatgatctccttcagtacatagctaataggtaatattattgtccttttactcactttcaag |
101 |
Q |
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| T |
30201339 |
ggtcacttgcgagacattgagatcgcgtctttttgcaccgacgatctccttcaatacatagctagttggtaatattattctccttttgctcactttcaag |
30201438 |
T |
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| Q |
102 |
tcttgcaaaatcacttattcatttatttataatgtt |
137 |
Q |
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| T |
30201439 |
tcttgtgaaattacttattcatttatttatgatgtt |
30201474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30227512 - 30227599
Alignment:
| Q |
1 |
cggtcacttggaagacattaagattgtgtctttttgcactgatgatctccttcagtacatagctaataggtaatattattgtcctttt |
88 |
Q |
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| T |
30227512 |
cggtcacttggaagacattgagattgtgtctttttgccctgacaatctccttcagaccatagttagctggtaatattgttttcctttt |
30227599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30214884 - 30214937
Alignment:
| Q |
1 |
cggtcacttggaagacattaagattgtgtctttttgcactgatgatctccttca |
54 |
Q |
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| T |
30214884 |
cggtcacttggaagacattgagatcgtgtctttttgcaatggtgatctccttca |
30214937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 15793 - 15896
Alignment:
| Q |
9 |
tggaagacattaagattgtgtctttttgcactgatgatctccttcagtacatagctaataggtaatattattgtccttttactcactttcaagtcttgca |
108 |
Q |
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| T |
15793 |
tggaagatattcaaattgtgtctttttgcactgacgatctacttaaatacatagctgactggtaatataatttttattttgcttactttcaagtcttgca |
15892 |
T |
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| Q |
109 |
aaat |
112 |
Q |
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|||| |
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| T |
15893 |
aaat |
15896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 17037077 - 17036974
Alignment:
| Q |
9 |
tggaagacattaagattgtgtctttttgcactgatgatctccttcagtacatagctaataggtaatattattgtccttttactcactttcaagtcttgca |
108 |
Q |
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| T |
17037077 |
tggaagatattcaaattgtgtctttttgcactgacgatctacttaaatacatagctgactggtaatataatttttattttgcttactttcaagtcttgca |
17036978 |
T |
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| Q |
109 |
aaat |
112 |
Q |
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|||| |
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| T |
17036977 |
aaat |
17036974 |
T |
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