View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_high_89 (Length: 233)
Name: NF11932_high_89
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 4846455 - 4846300
Alignment:
| Q |
5 |
agagagatgaaactccaaccacagcaaccatgagcgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttggg |
104 |
Q |
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| T |
4846455 |
agagacatgaaactccaaccacagcaaccatgaacgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttggg |
4846356 |
T |
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| Q |
105 |
attcataccagccagattattttcatcacttattttgaaaatctcgactccattca |
160 |
Q |
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| T |
4846355 |
attcataccagccagattgtttttatcacttactttgaaaatctcgattccattca |
4846300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 4712515 - 4712353
Alignment:
| Q |
5 |
agagagatgaaactccaaccacagcaaccatgagcgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttggg |
104 |
Q |
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| T |
4712515 |
agagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataat---gtgtttgatggg |
4712419 |
T |
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| Q |
105 |
attcataccagccagattattttcatcacttattttgaaaatctcgactccattcagtaagacatc |
170 |
Q |
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| T |
4712418 |
attcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatc |
4712353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 4630692 - 4630744
Alignment:
| Q |
118 |
agattattttcatcacttattttgaaaatctcgactccattcagtaagacatc |
170 |
Q |
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| T |
4630692 |
agattagttttatcacttattttgaaaatctcaattccattcagcaggacatc |
4630744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 4636602 - 4636668
Alignment:
| Q |
95 |
gtttgttgggattcataccagccagattatt---ttcatcacttattttgaaaatctcgactccatt |
158 |
Q |
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| T |
4636602 |
gtttgttgggattcaaaccagcgagattgttatatttatcactaattttgaaaatctcgattccatt |
4636668 |
T |
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