View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11932_high_9 (Length: 672)

Name: NF11932_high_9
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11932_high_9
NF11932_high_9
[»] chr3 (1 HSPs)
chr3 (22-656)||(43917462-43918095)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 22 - 656
Target Start/End: Original strand, 43917462 - 43918095
Alignment:
Q  22 ggagcattcagaaaggctaaggccaagcatcgtctacaaggcgaggaaaagaggaaacttccaatcaaacacagtgtaaccttgttgcacgaatttctgt 121  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  43917462 ggagcattcagaaaggttaaggccaagcatcgtctacaaggtgaggaaaagacgaaacttccaatcaaacacagtgtaaccttgttgcatgaatttctgt 43917561  T
Q  122 taaacaaaagaaaaagagtttgcttttctttcgttgagtttcggctgaaaacgcatccaaatttatattccagacgtgttctnnnnnnnccaaccacctc 221  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||       |||||||||||    
T  43917562 taaacagaagaaaaagagtttgcttttctttggttgagtttcggctgaaaacgcatcaaaatttctattccagccgtgttctaaaaaaaccaaccacctc 43917661  T
Q  222 accaatttgtcataccctggccccagcctgttatctaaaacaactacaacttttaaactagttaaaagtcatgctggatacttcccatccaccttttcct 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43917662 accaatttgtcataccctggccccagcctgttatctaaaacaactacaacttttaaactagttaaaagtcatgctggatacttcccatccaccttttcct 43917761  T
Q  322 tgtttaaaatttaaagatacaccatttgctaagaattgctagttaggattgtcattcttaaaaataagttnnnnnnnnnnnnnnnngaaactcaacacca 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||    
T  43917762 tgtttaaaatttaaagatacaccatttgctaagaattgctagttaggattgtcattcttaaaaataagttaaaaaaaaaaaaaaaa-aaactcaacacca 43917860  T
Q  422 aacttacctgtctactaatcactatgcctttaatggatcctacaagtttgttgattaattcttggcagaatttataactaagatattatcgtaaccatct 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43917861 aacttacctgtctactaatcactatgcctttaatggatcctacaagtttgttgattaattcttggcagaatttataactaagatattatcgtaaccatct 43917960  T
Q  522 taaaatgcaaagacagtctaatcgcaagcttctgaagaatatagtcgatttcctagattagcaaacaaaatgtttctaagaattaaaaattacgatttca 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43917961 taaaatgcaaagacagtctaatcgcaagcttctgaagaatatagtcgatttcctagattagcaaacaaaatgtttctaagaattaaaaattacgatttca 43918060  T
Q  622 aaggaagatataaaagtagctgacaggtttgggcc 656  Q
    |||||||||||||||||||||||||||||||||||    
T  43918061 aaggaagatataaaagtagctgacaggtttgggcc 43918095  T

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