View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11932_low_1 (Length: 897)
Name: NF11932_low_1
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 60 - 495
Target Start/End: Complemental strand, 38517922 - 38517503
Alignment:
| Q |
60 |
gttgactacagtatggaatagatatatctggataaatatctgatttaagtgactacacattggggttttgtgcaatatcctaatttcgatttggaatgat |
159 |
Q |
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| T |
38517922 |
gttgactacagtatggaatagatatatctggataaatatctgattgaagtgactacacattggggttttgtgcaatatcctaatttcgatttggaatgat |
38517823 |
T |
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| Q |
160 |
tagttgagtgtatagtgtggtagcatggattagagatttttataaacaaagtattgtttatatatcatatcaatgcaatataataaaatctattagaaaa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38517822 |
tagttgagtgtatagtgtggtagcatggattagagatttttataaacaaagtattgtttatatatcatatcaatgcaatataataaaatctattaaaaaa |
38517723 |
T |
|
| Q |
260 |
attggaagtgaaagttttctatgtaatgaagtttttacatcacatatcctttcctctcaccgagttgtgtgttggtaataaaattacaaatcaaaagatt |
359 |
Q |
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| T |
38517722 |
attggaagtgaaagttttctatgtaatgaagtttttacatcacatatcccatcctctgaccgagttgtgtgttggtaattaaattacaaatcaatagatt |
38517623 |
T |
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| Q |
360 |
caatacaaatacattatccatctggtttcaaatcagtcatgcacaacaaaaatataattttttggttgggagtgttgaataaatcttgaatcatgggaca |
459 |
Q |
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| T |
38517622 |
caatacaaatacattatccatctagttt---------------caacaaaaatataattttttggttgggagtgttgaataaatcttgaatcat-ggaaa |
38517539 |
T |
|
| Q |
460 |
atctataaaatcggaccaggtgcagtcagtcgtaaa |
495 |
Q |
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| T |
38517538 |
atctataaaatcggaccaggtgcagtcaatcgtaaa |
38517503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 590 - 880
Target Start/End: Complemental strand, 38517429 - 38517126
Alignment:
| Q |
590 |
caatctaatcacgcagacaagcttaaagcaaaatgaaaagccaacaatataca--gttaattttaattttgataaccaagcataaaacaagaacatgtta |
687 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38517429 |
caatgtaatcacgcagacaagcttaaagcaaattgaaaagccaacaatatacacagttaattttaactttgataaccaagcataaaacaagaacatgtta |
38517330 |
T |
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| Q |
688 |
gaaaattagaaaa-gatgtaatcataattaacttcaaatacaatctattttcttgttcacaaacgaacccagcttctacaaaaactataaagaaccaaag |
786 |
Q |
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| T |
38517329 |
gaaaattagaaaaagatgtaatcataattaacttcaaatacaatctattttcttgttcacaaacgaacccagcttctacaaaaactataaagaaccaaag |
38517230 |
T |
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| Q |
787 |
aaaat-aaagaaagactaaccaagataannnnnnngacataagattaacaag---------ataataataaaagagagaaacccaatttatttaattaca |
876 |
Q |
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||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38517229 |
aaaataaaaaaaagactaaccaagataatttttttgacataagattaacaagataataataataataataaaagagagaaacccaatttatttaattaca |
38517130 |
T |
|
| Q |
877 |
aatc |
880 |
Q |
| |
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|||| |
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|
| T |
38517129 |
aatc |
38517126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38517981 - 38517944
Alignment:
| Q |
1 |
taatcaacaggatgtaaatttcaaagcactttgttagc |
38 |
Q |
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| T |
38517981 |
taatcaacaggatgtaaatttcaaagcactttgttagc |
38517944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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