View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11932_low_100 (Length: 208)
Name: NF11932_low_100
Description: NF11932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11932_low_100 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 32638480 - 32638282
Alignment:
| Q |
1 |
acacatgtgattacattcaattatagaatataaccatgtgtgtcagtgtctgtgcttcatagaatatatccatgatgctcaaattataagaattaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32638480 |
acacatgtgattacattcaattatagaatataactatgtgtgtcagtgtctgtgcttcatagaatatatccatgatgctcaaattataagaattaaaatg |
32638381 |
T |
|
| Q |
101 |
acatagatcgatttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttcctttgc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32638380 |
acatagatcgatttattatatgaaattagaacacacttacttgatgaaaccatgattatccggacttcgccgagatttgagataggagtcttcctttgc |
32638282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 18424110 - 18424146
Alignment:
| Q |
105 |
agatcgatttattatatgaaattagaacacacttact |
141 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
18424110 |
agatcgagttattatatgaaattagaacacgcttact |
18424146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 16663412 - 16663324
Alignment:
| Q |
107 |
atcgatttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttcctttgc |
199 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
16663412 |
atcgagttattatatgaaattagaacacacttacttg--taaaccatgatta-ctgga-ttcgccgagatttgagacaagagtcttcctttgc |
16663324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 16691315 - 16691229
Alignment:
| Q |
107 |
atcgatttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttccttt |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||| | |||||||| | |||||||||||| |
|
|
| T |
16691315 |
atcgagttattatatgaaattagaacacacttacttg--taaaccatgatta-ccgga-ttcgccaatatttgagaaatgagtcttccttt |
16691229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 11569194 - 11569284
Alignment:
| Q |
105 |
agatcgatttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttcctttgc |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||| |||||| | ||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
11569194 |
agatcgagttattatatgaaattagaacacacttactt--tgaaaccttgatta-ccgga-ttcgccgagatttgagacaagagtcttcctttgc |
11569284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 25378132 - 25378048
Alignment:
| Q |
113 |
ttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttcctttgctt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| | || || ||||||||||||||| | | |||||||||||||||| |
|
|
| T |
25378132 |
ttattatatgaaattagaacacacttacttga--aaaccatgatca-ctaga-ttcgccgagatttgaaacaagagtcttcctttgctt |
25378048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 25406207 - 25406158
Alignment:
| Q |
105 |
agatcgatttattatatgaaattagaacacacttacttgatgaaaccatgat |
156 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25406207 |
agatcgagttattatatgaaattagaacacacttacttga--aaaccatgat |
25406158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 25856930 - 25857013
Alignment:
| Q |
112 |
tttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttcctttgc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| | |||||| ||| | |||||||||||||| |
|
|
| T |
25856930 |
tttattatatgaaattagaacacacttacttga--aaaccatgattatc-gga-ttcgtcaagatttaagacaagagtcttcctttgc |
25857013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 17368012 - 17367947
Alignment:
| Q |
113 |
ttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgaga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| | |||||| |||||||||||||||| |
|
|
| T |
17368012 |
ttattatatgaaattagaacacacttacttaa--aaaccatgatca-ctggac-tcgccgagatttgaga |
17367947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 25716319 - 25716281
Alignment:
| Q |
105 |
agatcgatttattatatgaaattagaacacacttacttg |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25716319 |
agatcaatttattatatgaaattagaacacactttcttg |
25716281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 39815312 - 39815394
Alignment:
| Q |
113 |
ttattatatgaaattagaacacacttacttgatgaaaccatgattatctggacttcgccgagatttgagataggagtcttcctttgc |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| || | |||||||||||||| |
|
|
| T |
39815312 |
ttattatatgaaattagaacgcacttacttga--aaaccatgattatc-gga-ttcgccgagatttcggacaagagtcttcctttgc |
39815394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 6862698 - 6862733
Alignment:
| Q |
113 |
ttattatatgaaattagaacacacttacttgatgaa |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6862698 |
ttattatatgaaattagaacacacttacttgatgaa |
6862733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 54348 - 54397
Alignment:
| Q |
105 |
agatcgatttattatatgaaattagaacacacttacttgatgaaaccatgat |
156 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54348 |
agatcgagttattatatgaaattagaacacacttacttga--aaaccatgat |
54397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 14002 - 13964
Alignment:
| Q |
105 |
agatcgatttattatatgaaattagaacacacttacttg |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14002 |
agatcgagttattatatgaaattagaacacacttacttg |
13964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 32142333 - 32142364
Alignment:
| Q |
113 |
ttattatatgaaattagaacacacttacttga |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32142333 |
ttattatatgaaattagaacacacttacttga |
32142364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University